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The map label for this gene is citF

Identifier: 30062072

GI number: 30062072

Start: 549775

End: 551307

Strand: Reverse

Name: citF

Synonym: S0539

Alternate gene names: 30062072

Gene position: 551307-549775 (Counterclockwise)

Preceding gene: 30062073

Following gene: 30062071

Centisome position: 11.99

GC content: 56.03

Gene sequence:

>1533_bases
ATGACGCAGAAAATTGAACAATCTCAACGACAAGAACGGGTAGCGGCCTGGAATCGTCGCACTGAATGCGATCTTGCCGC
TTTCCAGAACTCACCAAAGCAAACCTACCAGGCTGAAAAAGCGCGCGATCGCAAACTGTGCGCCAACCTGGAAGAAGCGA
TTCGTCGCTCAGGTTTACAGGACGGCATGACGGTTTCCTTCCATCACGCTTTCCGTGGCGGTGACCTGACCGTCAATATG
GTGATGGACGTCATCGCGAAGATGGGCTTTAAAAACCTGACCCTGGCGTCCAGCTCCCTGAGTGATTGCCATGCGCCGCT
GGTAGAACACATTCGCCAGGGCGTGGTTACCCGCATTTATACCTCTGGCCTACGCGGTCCACTGGCGGAAGAGATCTCCC
GTGGTCTGCTGGCGGAACCGGTGCAGATCCACTCTCACGGCGGTCGTGTGCATCTGGTACAGAGCGGCGAACTGAATATC
GACGTGGCTTTCCTCGGCGTCCCGTCCTGTGATGAATTCGGTAATGCCAACGGCTACACCGGTAAAGCCTGCTGCGGCTC
CCTCGGCTATGCAATGGTTGATGCCGACAACGCAAAACAGGTCGTGATGCTTACCGAAGAACTGCTGCCTTATCCGCATA
ATCCGGCAAGCATTGAGCAAGATCAGGTTGATTTGATCGTCAAAGTTAATCGCGTTGGCGATGCTGCAAAAATCGGCGCT
GGTACTACCCGTATGACCACTAACCCGCGCGAACTGCTTATTGCCCGTAGCGCTGCGGATGTGATTGTCAACTCTGGCTA
CTTCAAAGAAGGTTTCTCCATGCAAACCGGCACCGGCGGCGCTTCGCTGGCGGTAACCCGTTTCCTGGAAGACAAAATGC
GTAGCCGCGATATTCGCGCCGACTTCGCCCTCGGCGGTATTACCGCGACGATGGTTGATCTGCACGAAAAAGGTCTGATC
CGCAAACTGCTGGATGTGCAGAGCTTTGACAGCCATGCTGCGCAATCGCTGGCCCGTAACCCCAATCACATCGAAATCAG
CGCCAACCAGTACGCTAACTGGGGTTCGAAAGGCGCATCGGTTGATCGTCTCGACGTGGTGGTACTGAGCGCGCTGGAAA
TTGACAGGCAGTTCAACGTTAACGTGCTGACCGGTTCTGACGGCGTACTGCGTGGCGCTTCCGGTGGTCACTGCGATACC
GCGATTGCCTCTGCGCTTTCCATCATCGTCGCGCCACTGGTACGCGGTCGTATTCCGACTCTGGTGGATAACGTGCTGAC
CTGCATCACCCCGGGCTCCAGTGTCGATATTCTGGTCACAGACCACGGTATCGCAGTTAACCCGGCACGTCCGGAACTAG
CAGAACGTCTGCAGGAAGCGGGCATTAAAGTGGTTTCCATTGAGTGGCTGCGCGAACGTGCGCGTCTGCTGACCGGTGAA
CCACAGCCGATTGAATTCACCGACCGCGTCGTTGCCGTTGTGCGTTACCGCGATGGCTCGGTGATCGATGTTGTGCATCA
GGTGAAGGAATAA

Upstream 100 bases:

>100_bases
CTGAACGGCAAGATGGTGGACGGTCCGGTTATCGATCGCGCCCGTCTGGTGCTCTCCCGTGCAGAACTTTCCGGCATCCG
CGAAGAATAAGGCAATCAAA

Downstream 100 bases:

>100_bases
GCCATGCACCTGCTTCCTGAACTCGCCAGCCACCATGCGGTGTCAATTCCCGAGCTGCTCGTCAGCCGGGATGAAAGGCA
AGCACGGCAACACGCCTGGC

Product: citrate lyase alpha chain

Products: NA

Alternate protein names: Citrase alpha chain; Citrate (pro-3S)-lyase alpha chain; Citrate CoA-transferase subunit [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MTQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNM
VMDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVNRVGDAAKIGA
GTTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQTGTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLI
RKLLDVQSFDSHAAQSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDRQFNVNVLTGSDGVLRGASGGHCDT
AIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGE
PQPIEFTDRVVAVVRYRDGSVIDVVHQVKE

Sequences:

>Translated_510_residues
MTQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNM
VMDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVNRVGDAAKIGA
GTTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQTGTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLI
RKLLDVQSFDSHAAQSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDRQFNVNVLTGSDGVLRGASGGHCDT
AIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGE
PQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
>Mature_509_residues
TQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNMV
MDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNID
VAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVNRVGDAAKIGAG
TTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQTGTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIR
KLLDVQSFDSHAAQSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDRQFNVNVLTGSDGVLRGASGGHCDTA
IASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGEP
QPIEFTDRVVAVVRYRDGSVIDVVHQVKE

Specific function: Represents a citrate:acetyl-ACP transferase [H]

COG id: COG3051

COG function: function code C; Citrate lyase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786832, Length=510, Percent_Identity=99.0196078431373, Blast_Score=1038, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006472 [H]

Pfam domain/function: PF04223 CitF [H]

EC number: =4.1.3.6; =2.8.3.10 [H]

Molecular weight: Translated: 55306; Mature: 55174

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQ
CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVVTRIY
CCCEEEEEEEECCCCEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
TSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNIDVAFLGVPSCDEFGNANGYT
HHCCCCCHHHHHHCCHHCCCCEEECCCCEEEEEECCCEEEEEEEEECCCCHHCCCCCCCC
GKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVNRVGDAAKIGA
CHHHHHHCCEEEEECCCCCEEEEEEHHHCCCCCCCCCCCCCCEEEEEEEECCCCHHHCCC
GTTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQTGTGGASLAVTRFLEDKMRSRDIRA
CCCEECCCHHHHEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
DFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQSLARNPNHIEISANQYANWGSKGAS
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
VDRLDVVVLSALEIDRQFNVNVLTGSDGVLRGASGGHCDTAIASALSIIVAPLVRGRIPT
CHHHHHHHHHHHHHCCEECEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH
LVDNVLTCITPGSSVDILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGE
HHHHHHHHCCCCCCEEEEEECCCEEECCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCC
PQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
CCCCCHHCEEEEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure 
TQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDRKLCANLEEAIRRSGLQ
CCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSDCHAPLVEHIRQGVVTRIY
CCCEEEEEEEECCCCEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
TSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNIDVAFLGVPSCDEFGNANGYT
HHCCCCCHHHHHHCCHHCCCCEEECCCCEEEEEECCCEEEEEEEEECCCCHHCCCCCCCC
GKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASIEQDQVDLIVKVNRVGDAAKIGA
CHHHHHHCCEEEEECCCCCEEEEEEHHHCCCCCCCCCCCCCCEEEEEEEECCCCHHHCCC
GTTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQTGTGGASLAVTRFLEDKMRSRDIRA
CCCEECCCHHHHEEECCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
DFALGGITATMVDLHEKGLIRKLLDVQSFDSHAAQSLARNPNHIEISANQYANWGSKGAS
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
VDRLDVVVLSALEIDRQFNVNVLTGSDGVLRGASGGHCDTAIASALSIIVAPLVRGRIPT
CHHHHHHHHHHHHHCCEECEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH
LVDNVLTCITPGSSVDILVTDHGIAVNPARPELAERLQEAGIKVVSIEWLRERARLLTGE
HHHHHHHHCCCCCCEEEEEECCCEEECCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCC
PQPIEFTDRVVAVVRYRDGSVIDVVHQVKE
CCCCCHHCEEEEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]