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The map label for this gene is intD [H]

Identifier: 30061873

GI number: 30061873

Start: 324316

End: 324609

Strand: Reverse

Name: intD [H]

Synonym: S0322

Alternate gene names: 30061873

Gene position: 324609-324316 (Counterclockwise)

Preceding gene: 30061874

Following gene: 30061872

Centisome position: 7.06

GC content: 50.68

Gene sequence:

>294_bases
ATGAGAACCGACAGCAACAAGGCATGGAAGGGAGCGTTAAAGCGGGCAGGCATTAGCAACTTCCGCTTCCATGACCTGAG
GCATACCTGGGCAAGCTGGCTGGTTCAGTCCGGTGTCTCTCTTCTTGCGCTTAAAGAGATGGGAGGATGGGAAACTCTCG
AAATGGTTCAAAGATACGCCCACCTTTCAGCCGGGCATCTTACCGAGCACGCGAGCAAAATCGATGCGATTATAAGTCGC
AATGGCACAAATACGGCACAAGAGGAGAACGTAGTTTACTTAAATGCGAGGTAA

Upstream 100 bases:

>100_bases
CAAATGGTAGTGTCCGCTATTGCCAGTACACCTCAGGGTGTTTGTCCACACCAAACCTGCCTACCGAAGCGACGGAACAA
AAACAGCAGCGGTAAGGAAG

Downstream 100 bases:

>100_bases
CTTATTGATTTAAATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATTATAAGAATCCGCTTGTAAT
TCAAAGGATTATCCCATCAA

Product: integrase fragment

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISR
NGTNTAQEENVVYLNAR

Sequences:

>Translated_97_residues
MRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISR
NGTNTAQEENVVYLNAR
>Mature_97_residues
MRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISR
NGTNTAQEENVVYLNAR

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=89, Percent_Identity=64.0449438202247, Blast_Score=128, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 10951; Mature: 10951

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYA
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHEHHHHCCCHHHHHHHHHHH
HLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYA
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHEHHHHCCCHHHHHHHHHHH
HLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]