| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349732
Identifier: 29349732
GI number: 29349732
Start: 5695257
End: 5697899
Strand: Reverse
Name: 29349732
Synonym: BT_4324
Alternate gene names: NA
Gene position: 5697899-5695257 (Counterclockwise)
Preceding gene: 29349733
Following gene: 29349731
Centisome position: 91.02
GC content: 45.52
Gene sequence:
>2643_bases ATGAAAAACACCACTACTCTTCAAAGTAAAAGAAGTATTACAGTACTCTTGGGAGTCCTTCTATATTTCTCATCGCTATC TGCACAGACCATGCAAGATACGATTATAGCTAACTTCAGTCTGATGGAAAGAATTCCTAAAGAAAAGTTGTACCTCCATC TGGACAAGCCTTTCTACGGAGCCGGAGAAAAGATATGGTTCAAAGGCTATCTGGTGAACGCCACCACCCATCAGGACAAC TCACAAAGTAATTTTATCATTACGGAACTGATCAACCGTTCCGACTCCATTGTGGAACGAAAGAAAATCCGCAGAGATTC TCTCGGATTCCACAACGCCTTCACCCTCCCTGCCACCCTTCCGGCAGGCGATTACTACCTGCGGGGGTACAGCAACTGGA TGCTGAATGAAGACCCCGACTTTTTCTTTTCGCGCAACATCAAGATAGGAAACTCTATCGACAATACCATCGTTTCGAGC ATTGAGTATCAGCAAGAAGACGATACACATTACACTGCCAAAATCAAATTTACAAGCAACGTACAGGCTGTTTTCGAAAA TACAACGATCAAATACCTATACCTTGAGAATGGTAAGATAAAAAACAAAGGCAAAAAAAAGACGGACGAAAACGGCTGGA TTTCCATTTCCCTGCCCGATTTAAAATCTCCGGCAGCGCGCAGAATAGAAGTAGAATTTGACGATCCGCAATATATCTAC AAACGGACTTTCCATCTGCCGGTGTTCACCAATGATTTCGATGTGAAGTTTTTCCCCGAAGGCGGTGCCCTACTCAGCAT TCCCCATCAGAATGTCGCTTTCAAAGCACAGGGAGCAGACGGTTTTTCTAAAGAAGTCGAAGGTTTCTTGTTCAACTCCA AAGGAGACACGCTTACCAATTTCCGGTCGGAACACAACGGTATGGGTATCTTTACAATGAATCCCGTCAACAATGAGACT TATTATGTTACGGTAAGAACCAATGACAGTATTACCAAGCGATTTGACCTTCCTGCCATAGAACCGAAAGGAATCTCCAT CGCCATGTCGCACTATAAACAGGAGATTCGCTACGAAATCCAAAAGACAGAAGCGACCGAATGGCCTCAGAAACTATTCC TGCTTGCACATACCCGTGGCAAACTGGCCATTTTACAACCCATCAATCCGAAAAGAACTTTCGGAAAGATGAATGACAGC CTGTTTACGGAAGGGATCACTCACTTCATGCTGATTGATGAACAAGGAAATGCACTTAGCGAACGGTTGATTTTCGTTCC GGATCATAAGCCGAATCAATGGCAAATCACTGCAGACCAACCGACGTATGGAAAAAGAGAGAAGGTATCTTTGCAGATCG CTGCCAAAGACAACGAAGGTAACCCGGTAGAAGGAACCTTCTCTGTCAGCATCACCGACCGGAAAAGTATTCAACCCGAC TCTCTTGCCGACAATATCCTGTCCAATCTCCTGCTGACTTCGGATCTGAAAGGATATGTGGAAGACCCCGCATACTATTT TCTAAATCAGGACGCCCGGACGCTCCGTTCCATCGACTATCTGATGATGACACATGGTTGGCGCAGGCATAAAATGGAAA ATGTTCTCCGCACTCCTTCGCTGAATTTCACAAATTATATAGAAAAAGGACAAACCATCAGCGGACGAATCATGGGATTC TTCGGAGCAAACGTAAAGAAAGGTCCCATCTGTGTACTGGCTCCCAAATACAATATCATAGCCACCACCGAGACAGACGA GAAAGGCCAGTTCATCGTCAATACCTCATTCAGAGACAGCACGACATTCCTTGTTCAGGCACGCACCAAGAAAGGATTTG CCGGTGTAGATATTCTAATGGATCCTCCCCAGTACCCGGTCGCTACGCATAAAGCCCCTTATTTTAACGGAGCAACTACC TTTATGGAAGATTATCTGATGAATACCCGTGACCAGTATTATATGGAAGGGGGAATGCGTGTGTACAATCTGAAAGAAGT GACAGTTACAGCGAAGCGGGAACGTCCGAGTTCAAAAAGTATCTATACGGGAGGTATCAACACCTATACTGTAGAAGAAG ACAGACTGCAAGGATACGGTCAGACAGCTTTTGATGCAGCCAGCAGACTACCCAGCGTTACAATCACGAACGGAAGTGAG ATACATATCCGTAACAATTCCGAACCGGCAATCATTGTTATCGATGATATTGTGTATGAAGATGCTTCCGATATTTTGAA GGATATCCAAGTCAGTGACATGTCCAGTATCAGTCTGCTTCGAGGAGCAGATGCCGTCATACTGGGTCCCCGTGCTTCCG GAGGTGCCGTTGTCATCACTCTGAAAGACCCTAGAAATCTTCCGGCCAGACCAGCGCAGGGAATTATCACTTATACGCCG CTGGGATACAGTGAGTCCGTAGAATTCTATCACCCCACCTATGATACTCCCGAGAAAAAGAACGCTCAGCGTTCGGACTT CCGGAGTACCGTTTACTGGAATCCGGAATTACGGTTAGACGCCGAAGGCAAAGCGACCATAGAATACTATACACCGGACA GCACAGCTCCCGAAGATATCATTATCGAGGGCGTGGACAAGAATGGAAAGGTATGTCGTATCCTACAGACCATTAATAAG TAG
Upstream 100 bases:
>100_bases TGGGTATTCTTTTATTCCTCATCGTATCAGTCATTAATATACTGGCTGTGAAGCGAAAAGTTCTTTCTATCTGGATGCAT AAAAATTAAAAACACAATAT
Downstream 100 bases:
>100_bases CTTTTCTCAACGCTTCTTCAAACTTTTATGTAGTTCAAATTTGAGTTCTGCTTCCTATTAAATAATCAGATAAAAGCATC CAAATAACCCACTGGGTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MKNTTTLQSKRSITVLLGVLLYFSSLSAQTMQDTIIANFSLMERIPKEKLYLHLDKPFYGAGEKIWFKGYLVNATTHQDN SQSNFIITELINRSDSIVERKKIRRDSLGFHNAFTLPATLPAGDYYLRGYSNWMLNEDPDFFFSRNIKIGNSIDNTIVSS IEYQQEDDTHYTAKIKFTSNVQAVFENTTIKYLYLENGKIKNKGKKKTDENGWISISLPDLKSPAARRIEVEFDDPQYIY KRTFHLPVFTNDFDVKFFPEGGALLSIPHQNVAFKAQGADGFSKEVEGFLFNSKGDTLTNFRSEHNGMGIFTMNPVNNET YYVTVRTNDSITKRFDLPAIEPKGISIAMSHYKQEIRYEIQKTEATEWPQKLFLLAHTRGKLAILQPINPKRTFGKMNDS LFTEGITHFMLIDEQGNALSERLIFVPDHKPNQWQITADQPTYGKREKVSLQIAAKDNEGNPVEGTFSVSITDRKSIQPD SLADNILSNLLLTSDLKGYVEDPAYYFLNQDARTLRSIDYLMMTHGWRRHKMENVLRTPSLNFTNYIEKGQTISGRIMGF FGANVKKGPICVLAPKYNIIATTETDEKGQFIVNTSFRDSTTFLVQARTKKGFAGVDILMDPPQYPVATHKAPYFNGATT FMEDYLMNTRDQYYMEGGMRVYNLKEVTVTAKRERPSSKSIYTGGINTYTVEEDRLQGYGQTAFDAASRLPSVTITNGSE IHIRNNSEPAIIVIDDIVYEDASDILKDIQVSDMSSISLLRGADAVILGPRASGGAVVITLKDPRNLPARPAQGIITYTP LGYSESVEFYHPTYDTPEKKNAQRSDFRSTVYWNPELRLDAEGKATIEYYTPDSTAPEDIIIEGVDKNGKVCRILQTINK
Sequences:
>Translated_880_residues MKNTTTLQSKRSITVLLGVLLYFSSLSAQTMQDTIIANFSLMERIPKEKLYLHLDKPFYGAGEKIWFKGYLVNATTHQDN SQSNFIITELINRSDSIVERKKIRRDSLGFHNAFTLPATLPAGDYYLRGYSNWMLNEDPDFFFSRNIKIGNSIDNTIVSS IEYQQEDDTHYTAKIKFTSNVQAVFENTTIKYLYLENGKIKNKGKKKTDENGWISISLPDLKSPAARRIEVEFDDPQYIY KRTFHLPVFTNDFDVKFFPEGGALLSIPHQNVAFKAQGADGFSKEVEGFLFNSKGDTLTNFRSEHNGMGIFTMNPVNNET YYVTVRTNDSITKRFDLPAIEPKGISIAMSHYKQEIRYEIQKTEATEWPQKLFLLAHTRGKLAILQPINPKRTFGKMNDS LFTEGITHFMLIDEQGNALSERLIFVPDHKPNQWQITADQPTYGKREKVSLQIAAKDNEGNPVEGTFSVSITDRKSIQPD SLADNILSNLLLTSDLKGYVEDPAYYFLNQDARTLRSIDYLMMTHGWRRHKMENVLRTPSLNFTNYIEKGQTISGRIMGF FGANVKKGPICVLAPKYNIIATTETDEKGQFIVNTSFRDSTTFLVQARTKKGFAGVDILMDPPQYPVATHKAPYFNGATT FMEDYLMNTRDQYYMEGGMRVYNLKEVTVTAKRERPSSKSIYTGGINTYTVEEDRLQGYGQTAFDAASRLPSVTITNGSE IHIRNNSEPAIIVIDDIVYEDASDILKDIQVSDMSSISLLRGADAVILGPRASGGAVVITLKDPRNLPARPAQGIITYTP LGYSESVEFYHPTYDTPEKKNAQRSDFRSTVYWNPELRLDAEGKATIEYYTPDSTAPEDIIIEGVDKNGKVCRILQTINK >Mature_880_residues MKNTTTLQSKRSITVLLGVLLYFSSLSAQTMQDTIIANFSLMERIPKEKLYLHLDKPFYGAGEKIWFKGYLVNATTHQDN SQSNFIITELINRSDSIVERKKIRRDSLGFHNAFTLPATLPAGDYYLRGYSNWMLNEDPDFFFSRNIKIGNSIDNTIVSS IEYQQEDDTHYTAKIKFTSNVQAVFENTTIKYLYLENGKIKNKGKKKTDENGWISISLPDLKSPAARRIEVEFDDPQYIY KRTFHLPVFTNDFDVKFFPEGGALLSIPHQNVAFKAQGADGFSKEVEGFLFNSKGDTLTNFRSEHNGMGIFTMNPVNNET YYVTVRTNDSITKRFDLPAIEPKGISIAMSHYKQEIRYEIQKTEATEWPQKLFLLAHTRGKLAILQPINPKRTFGKMNDS LFTEGITHFMLIDEQGNALSERLIFVPDHKPNQWQITADQPTYGKREKVSLQIAAKDNEGNPVEGTFSVSITDRKSIQPD SLADNILSNLLLTSDLKGYVEDPAYYFLNQDARTLRSIDYLMMTHGWRRHKMENVLRTPSLNFTNYIEKGQTISGRIMGF FGANVKKGPICVLAPKYNIIATTETDEKGQFIVNTSFRDSTTFLVQARTKKGFAGVDILMDPPQYPVATHKAPYFNGATT FMEDYLMNTRDQYYMEGGMRVYNLKEVTVTAKRERPSSKSIYTGGINTYTVEEDRLQGYGQTAFDAASRLPSVTITNGSE IHIRNNSEPAIIVIDDIVYEDASDILKDIQVSDMSSISLLRGADAVILGPRASGGAVVITLKDPRNLPARPAQGIITYTP LGYSESVEFYHPTYDTPEKKNAQRSDFRSTVYWNPELRLDAEGKATIEYYTPDSTAPEDIIIEGVDKNGKVCRILQTINK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99703; Mature: 99703
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNTTTLQSKRSITVLLGVLLYFSSLSAQTMQDTIIANFSLMERIPKEKLYLHLDKPFYG CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCCC AGEKIWFKGYLVNATTHQDNSQSNFIITELINRSDSIVERKKIRRDSLGFHNAFTLPATL CCCEEEEEEEEEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHHHCCCCCCEEECCEEC PAGDYYLRGYSNWMLNEDPDFFFSRNIKIGNSIDNTIVSSIEYQQEDDTHYTAKIKFTSN CCCCEEEEECCCCCCCCCCCEEEECCEEECCCCCHHHHHHEECCCCCCCEEEEEEEECCC VQAVFENTTIKYLYLENGKIKNKGKKKTDENGWISISLPDLKSPAARRIEVEFDDPQYIY EEEEECCCEEEEEEEECCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEE KRTFHLPVFTNDFDVKFFPEGGALLSIPHQNVAFKAQGADGFSKEVEGFLFNSKGDTLTN EEEEECEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCHHH FRSEHNGMGIFTMNPVNNETYYVTVRTNDSITKRFDLPAIEPKGISIAMSHYKQEIRYEI HHHHCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEHHHHHHHHHEEE QKTEATEWPQKLFLLAHTRGKLAILQPINPKRTFGKMNDSLFTEGITHFMLIDEQGNALS ECCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHCCCHHHHHCCCEEEEEEECCCCCCC ERLIFVPDHKPNQWQITADQPTYGKREKVSLQIAAKDNEGNPVEGTFSVSITDRKSIQPD CEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCH SLADNILSNLLLTSDLKGYVEDPAYYFLNQDARTLRSIDYLMMTHGWRRHKMENVLRTPS HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC LNFTNYIEKGQTISGRIMGFFGANVKKGPICVLAPKYNIIATTETDEKGQFIVNTSFRDS CCHHHHHHCCCEEEEEEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEECCCCC TTFLVQARTKKGFAGVDILMDPPQYPVATHKAPYFNGATTFMEDYLMNTRDQYYMEGGMR EEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCE VYNLKEVTVTAKRERPSSKSIYTGGINTYTVEEDRLQGYGQTAFDAASRLPSVTITNGSE EEEEEEEEEEEECCCCCCCCEEECCCEEEEECHHHHCCCCCHHHHHHHHCCEEEEECCCE IHIRNNSEPAIIVIDDIVYEDASDILKDIQVSDMSSISLLRGADAVILGPRASGGAVVIT EEEECCCCCEEEEEECHHHCCHHHHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCEEEEE LKDPRNLPARPAQGIITYTPLGYSESVEFYHPTYDTPEKKNAQRSDFRSTVYWNPELRLD ECCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCHHCCCEEEEECCCEEEC AEGKATIEYYTPDSTAPEDIIIEGVDKNGKVCRILQTINK CCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHHHCC >Mature Secondary Structure MKNTTTLQSKRSITVLLGVLLYFSSLSAQTMQDTIIANFSLMERIPKEKLYLHLDKPFYG CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCCC AGEKIWFKGYLVNATTHQDNSQSNFIITELINRSDSIVERKKIRRDSLGFHNAFTLPATL CCCEEEEEEEEEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHHHCCCCCCEEECCEEC PAGDYYLRGYSNWMLNEDPDFFFSRNIKIGNSIDNTIVSSIEYQQEDDTHYTAKIKFTSN CCCCEEEEECCCCCCCCCCCEEEECCEEECCCCCHHHHHHEECCCCCCCEEEEEEEECCC VQAVFENTTIKYLYLENGKIKNKGKKKTDENGWISISLPDLKSPAARRIEVEFDDPQYIY EEEEECCCEEEEEEEECCEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEE KRTFHLPVFTNDFDVKFFPEGGALLSIPHQNVAFKAQGADGFSKEVEGFLFNSKGDTLTN EEEEECEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCHHH FRSEHNGMGIFTMNPVNNETYYVTVRTNDSITKRFDLPAIEPKGISIAMSHYKQEIRYEI HHHHCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEHHHHHHHHHEEE QKTEATEWPQKLFLLAHTRGKLAILQPINPKRTFGKMNDSLFTEGITHFMLIDEQGNALS ECCCCCCCCCEEEEEEECCCCEEEEECCCCCHHHHCCCHHHHHCCCEEEEEEECCCCCCC ERLIFVPDHKPNQWQITADQPTYGKREKVSLQIAAKDNEGNPVEGTFSVSITDRKSIQPD CEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCH SLADNILSNLLLTSDLKGYVEDPAYYFLNQDARTLRSIDYLMMTHGWRRHKMENVLRTPS HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC LNFTNYIEKGQTISGRIMGFFGANVKKGPICVLAPKYNIIATTETDEKGQFIVNTSFRDS CCHHHHHHCCCEEEEEEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEECCCCC TTFLVQARTKKGFAGVDILMDPPQYPVATHKAPYFNGATTFMEDYLMNTRDQYYMEGGMR EEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCE VYNLKEVTVTAKRERPSSKSIYTGGINTYTVEEDRLQGYGQTAFDAASRLPSVTITNGSE EEEEEEEEEEEECCCCCCCCEEECCCEEEEECHHHHCCCCCHHHHHHHHCCEEEEECCCE IHIRNNSEPAIIVIDDIVYEDASDILKDIQVSDMSSISLLRGADAVILGPRASGGAVVIT EEEECCCCCEEEEEECHHHCCHHHHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCEEEEE LKDPRNLPARPAQGIITYTPLGYSESVEFYHPTYDTPEKKNAQRSDFRSTVYWNPELRLD ECCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCHHCCCEEEEECCCEEEC AEGKATIEYYTPDSTAPEDIIIEGVDKNGKVCRILQTINK CCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA