Click here to switch to the map view.

The map label for this gene is 29349710

Identifier: 29349710

GI number: 29349710

Start: 5669508

End: 5670173

Strand: Reverse

Name: 29349710

Synonym: BT_4302

Alternate gene names: NA

Gene position: 5670173-5669508 (Counterclockwise)

Preceding gene: 29349714

Following gene: 29349708

Centisome position: 90.57

GC content: 46.85

Gene sequence:

>666_bases
ATGAAGCGAGATATTCAGCGTATCATGCTGGCTACAGCGGTGCCGTTGTTCCTAATTTTTATCCTATTTCTGCTAAAGAT
CGTTGAAGTCGGCATGGACTGGGACTTCTCTCACATGGGAATATACCCTCTGGAAAAGCGAGGAATAACGGGTATTCTGA
CTCATCCGCTGATACACAGCGGGTTCAGCCATTTGCTGGCCAATACGTTGCCGCTATTTTTTTTATCATGGTGCTTGTTC
TATTTCTACAGGGGGATAGCCGGACGTATTTTTATGATCATCTGGATCGGAGCCGGACTGCTGACCTTCATTATCGGCAA
ACCGGGATGGCACATCGGTGCCAGCGGACTGATTTACGGACTTGCCTTCTTTCTTTTTTTCAGTGGTATCCTGCGGAAAT
ATGTTCCTCTGATTGCCATCTCACTGCTTGTCACCTTTTTGTATGGAGGAATCATCTGGCATATGTTCCCCTACTTCTCT
CCCGCCAACATGTCATGGGAAGGACATCTCAGCGGAGGAATCATGGGAACACTCTGTGCATTCGGTTTCTTGAATCACGG
GCCTCAACGACCAGAACCTTTTGCGGACGAAACGGATGAAGAAGAAGAGGAATCTCCGGAAGAAGATATCAACAATACAA
CCGACTCTACGGATATTACCTCATAA

Upstream 100 bases:

>100_bases
TACAAATTCTAGATAAAAACAAAAATAAAAAGGCTTTTTATTTTCAGTTTTTGTGCAAATATTCGTAGTATTGCGTAAAA
TATCTAAAGAATAGAAAGTA

Downstream 100 bases:

>100_bases
ATCCCGGTTACGACTTATGCAATGCCTCAATCAGCAAGGTGATATTAGCAGTAAACAACCTTACTGAGATAGCGAGCAGG
ATGATACCGAAAAACTTACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKRDIQRIMLATAVPLFLIFILFLLKIVEVGMDWDFSHMGIYPLEKRGITGILTHPLIHSGFSHLLANTLPLFFLSWCLF
YFYRGIAGRIFMIIWIGAGLLTFIIGKPGWHIGASGLIYGLAFFLFFSGILRKYVPLIAISLLVTFLYGGIIWHMFPYFS
PANMSWEGHLSGGIMGTLCAFGFLNHGPQRPEPFADETDEEEEESPEEDINNTTDSTDITS

Sequences:

>Translated_221_residues
MKRDIQRIMLATAVPLFLIFILFLLKIVEVGMDWDFSHMGIYPLEKRGITGILTHPLIHSGFSHLLANTLPLFFLSWCLF
YFYRGIAGRIFMIIWIGAGLLTFIIGKPGWHIGASGLIYGLAFFLFFSGILRKYVPLIAISLLVTFLYGGIIWHMFPYFS
PANMSWEGHLSGGIMGTLCAFGFLNHGPQRPEPFADETDEEEEESPEEDINNTTDSTDITS
>Mature_221_residues
MKRDIQRIMLATAVPLFLIFILFLLKIVEVGMDWDFSHMGIYPLEKRGITGILTHPLIHSGFSHLLANTLPLFFLSWCLF
YFYRGIAGRIFMIIWIGAGLLTFIIGKPGWHIGASGLIYGLAFFLFFSGILRKYVPLIAISLLVTFLYGGIIWHMFPYFS
PANMSWEGHLSGGIMGTLCAFGFLNHGPQRPEPFADETDEEEEESPEEDINNTTDSTDITS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML1171 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 24964; Mature: 24964

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRDIQRIMLATAVPLFLIFILFLLKIVEVGMDWDFSHMGIYPLEKRGITGILTHPLIHS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
GFSHLLANTLPLFFLSWCLFYFYRGIAGRIFMIIWIGAGLLTFIIGKPGWHIGASGLIYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAFFLFFSGILRKYVPLIAISLLVTFLYGGIIWHMFPYFSPANMSWEGHLSGGIMGTLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
FGFLNHGPQRPEPFADETDEEEEESPEEDINNTTDSTDITS
HHHHHCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKRDIQRIMLATAVPLFLIFILFLLKIVEVGMDWDFSHMGIYPLEKRGITGILTHPLIHS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
GFSHLLANTLPLFFLSWCLFYFYRGIAGRIFMIIWIGAGLLTFIIGKPGWHIGASGLIYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAFFLFFSGILRKYVPLIAISLLVTFLYGGIIWHMFPYFSPANMSWEGHLSGGIMGTLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
FGFLNHGPQRPEPFADETDEEEEESPEEDINNTTDSTDITS
HHHHHCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]