| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349714
Identifier: 29349714
GI number: 29349714
Start: 5675159
End: 5676787
Strand: Reverse
Name: 29349714
Synonym: BT_4306
Alternate gene names: NA
Gene position: 5676787-5675159 (Counterclockwise)
Preceding gene: 29349715
Following gene: 29349710
Centisome position: 90.68
GC content: 36.22
Gene sequence:
>1629_bases ATGAAAGCAAAATATGCCTTGATAGCTTTACTGGCAATCACATTTTTCGGATGCGATGATAATACAGGCGGACTGGGATT AGGAATGTTCCCGGGCAATGACCAAAATATCAAAGGAAAGTTATCCACGTTTGATGTAACTACTGAATCTGTTAAGACAG GTGACATTTATGCGAAAACTAACATCGGTTATATTGGCAAATTCACTGATGAAACATTTGGCACTTATCAGGCTGGATTC TTGGCTCAGCTAAATTGTCCGGATGGACTAACTTTTCCTGAACCATACAAAGAAGTTACAGATGCAAGTGGTAATGTTAT TTCAGCCACAGGAAGAATGGTTGTCGATGATAAAGATCCAGAAAATAAAGATGTTACTTTTATAAAAGACGGAAATCAAA TCATAGGAAACATACGTGCAGTCGAACTCTACCTGTGGTATGACAGCTACTTTGGAGACTCATTGACAGCTTGTAGATTA AGTGTATATGAACTGGGAGGCAATGGGAAAGAGACATTAAATCTTGATAATGCTTACTATACCGATATTAACCCTGAGGA TTTTTACGATAGTCAGAATATATTAGGAACCAAAGCATATACAGCCGTAGATCTTTCAGTAAAAGATTCTATTCGTAACC TAAGCACATATGTTCCAAGTGTGCATATTGCTTTCAAAGAGGATATAGCAACAAGAGTAGGTGGAAATATTTTAACTGCG GCAAGAAAAGCTAAAAATGCTGATAAGGAATTCAATAGCCAATTATTCAGAGAAGCTTTTCAAGGAATCTACGTTAAGAG CGACTATGGTGATGGAACTGTACTCTATATAGATCAGCCACAAATGAATGTAGTATACAAATGCTATGCAACAGATTCTA TTACCGGAAAAAAATTACAGAAGAAAGACGGAAGTGGTAAGGACTCTACTTATTACTCTTATCGTGTGTTTGCTACAACT CGTGAAGTAATCCAAGCCAATCAATTAAAGAATGATCCCGAAAGGATAGATGCATTAATTAAGGAAGATAAAAACACTTA TTTAAAGAGTCCGGCAGGTATTTTCACCGAAGCTACACTACCCATTTCAGATATACAAAATGAATTGACAGGCGATACCT TAAATGCAGTAAAACTGACATTCACTAATTACAATCAAACAGGTGATAAGAAGTTTGGTATGGCTATACCATCTACTGTA ATGCTTGTACGTAAGAAATTCCAGGATAGCTTCTTTAAAGACAATAAGCTGAGCGATGGTGTATCTTCTTATCTAACTTC ACACACAAGTAGCACGAACCAATATGTATTCAGCAACATCACCAAATTGGTAAATGCTTGTATTGCAGAAAAGGAAGAGG CTAAAAAGAATGCTGGTAGTTCATGGGATGAAACTAAATGGTTACAAGAAAACCCTGATTGGAACAAAGTAGTCCTTATA CCTGTACTTGTGACTTATGACTCTTCAAATACTACAACTGGTCAAGCTAATATTATTAGAATACAACATGATTTAAAACC AGGTTATGTACGGCTGAAAGGTGGAAGTCTAGGCAAAACAAATCCTGATTACAAGTTGAAACTTGAAGTTATTTCTACAG ACTTCGGATTAACAACTAAGTCAAACTAA
Upstream 100 bases:
>100_bases GATCCGGAAAACTACGCAAACGCTTGCAACGAATTCTACGATCAGGTATGGGAAACCACTACAAATAAAGAAGAAGAATA AAAATCTAGATACGACAATC
Downstream 100 bases:
>100_bases AAAGATATATAAAATAAACAGCGCGGGTTACTTCGGTAATTCGCGCTGTTTTTTTATATGTACCTGTACCTTCCAATATA TAAAAAACAACCGTGAGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 542; Mature: 542
Protein sequence:
>542_residues MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKTNIGYIGKFTDETFGTYQAGF LAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDPENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRL SVYELGGNGKETLNLDNAYYTDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTA ARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQKKDGSGKDSTYYSYRVFATT REVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATLPISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTV MLVRKKFQDSFFKDNKLSDGVSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLI PVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTKSN
Sequences:
>Translated_542_residues MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKTNIGYIGKFTDETFGTYQAGF LAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDPENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRL SVYELGGNGKETLNLDNAYYTDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTA ARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQKKDGSGKDSTYYSYRVFATT REVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATLPISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTV MLVRKKFQDSFFKDNKLSDGVSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLI PVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTKSN >Mature_542_residues MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKTNIGYIGKFTDETFGTYQAGF LAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDPENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRL SVYELGGNGKETLNLDNAYYTDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTA ARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQKKDGSGKDSTYYSYRVFATT REVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATLPISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTV MLVRKKFQDSFFKDNKLSDGVSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLI PVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTKSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60057; Mature: 60057
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKT CCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCEECCCEEEEC NIGYIGKFTDETFGTYQAGFLAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDP CCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEECCEEEECCCCC ENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRLSVYELGGNGKETLNLDNAYY CCCCEEEEECCCEEEECEEEEEEEEEEECCCCCCHHEEEEEEEEECCCCCEEEECCCEEE TDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTA CCCCHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCHHHH ARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQ HHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCHHH KKDGSGKDSTYYSYRVFATTREVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATL CCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCCEEECCC PISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTVMLVRKKFQDSFFKDNKLSDG CHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH VSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEEEEE PVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTK EEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCEEEC SN CC >Mature Secondary Structure MKAKYALIALLAITFFGCDDNTGGLGLGMFPGNDQNIKGKLSTFDVTTESVKTGDIYAKT CCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCEECCCEEEEC NIGYIGKFTDETFGTYQAGFLAQLNCPDGLTFPEPYKEVTDASGNVISATGRMVVDDKDP CCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEECCEEEECCCCC ENKDVTFIKDGNQIIGNIRAVELYLWYDSYFGDSLTACRLSVYELGGNGKETLNLDNAYY CCCCEEEEECCCEEEECEEEEEEEEEEECCCCCCHHEEEEEEEEECCCCCEEEECCCEEE TDINPEDFYDSQNILGTKAYTAVDLSVKDSIRNLSTYVPSVHIAFKEDIATRVGGNILTA CCCCHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCHHHH ARKAKNADKEFNSQLFREAFQGIYVKSDYGDGTVLYIDQPQMNVVYKCYATDSITGKKLQ HHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCHHH KKDGSGKDSTYYSYRVFATTREVIQANQLKNDPERIDALIKEDKNTYLKSPAGIFTEATL CCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCCCEEECCC PISDIQNELTGDTLNAVKLTFTNYNQTGDKKFGMAIPSTVMLVRKKFQDSFFKDNKLSDG CHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH VSSYLTSHTSSTNQYVFSNITKLVNACIAEKEEAKKNAGSSWDETKWLQENPDWNKVVLI HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEEEEE PVLVTYDSSNTTTGQANIIRIQHDLKPGYVRLKGGSLGKTNPDYKLKLEVISTDFGLTTK EEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCEEEC SN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA