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The map label for this gene is ydgJ [C]

Identifier: 29349660

GI number: 29349660

Start: 5603223

End: 5604482

Strand: Reverse

Name: ydgJ [C]

Synonym: BT_4252

Alternate gene names: 29349660

Gene position: 5604482-5603223 (Counterclockwise)

Preceding gene: 161511188

Following gene: 29349659

Centisome position: 89.52

GC content: 47.78

Gene sequence:

>1260_bases
ATGGAAGATTCTCCAACGCAATCACACGTACTGCAATTGGCACACCCCCCTATCCCAATTGTCCGCATCGGAATCATAGG
ATTGGGGAATCGAGGGCTACTCACCCTGCAACGTTATCTGCAAATAGAAGGAACCGAAATCAAAGCTCTCAGCGAAATCA
GGGAAGGTAACTTGAACAAAGCCCAACTCATACTCAAAGAAGCAAAGCACCCCGAAGCCACGGGATATACCGGACCAGGC
GGCTGGCGAAAGATGTGTGAATGCAACGATCTGGATTTAATTTTTATCTGTACAGACTGGCTCACTCACACCCCAATGGC
AACCTATGCAATGGAATGCGGCAAACATGTAGCTATCGAAGTTCCTGCCGCCATGAATATAGCCGAATGCTGGCAACTGG
TCGATACAGCAGAAAAGACAAGACGCCACTGTATCATGCTGGAAAATTGCTGTTATGACCCTTTTGCCCTGACTACTCTC
GAAATGGCACGTCAAGGTGTACTCGGAGAAATAATGCATGTAGAAGGAGCGTATATTCACGATCTCCGTTCCATGTATTT
TGCCGAAGAGAGCGAAGGCGGTTACCACAATCACTGGGGAAAAAGATACAGTATCGAACATACAGGCAATCCCTACCCCA
CCCACGGACTGGGACCTGCATGTCAGATTCTCGACATCCACCGCAATGACAGAATGGAATATCTCGTATCCATGTCCACC
CATCAGGCCGGCATGAGCGAGTATGCGCGGAAAAGATTCGGAGAGAACTCACCGGAAGCCCGTCAGAAGTATAAGCTGGG
AGATGTCAACACCACGCTTATCCATACCGCCAAAGGAAAAACGATCATGCTTCAGTATAATGTTTCTACTCCCCGCCCTT
ACAGTCGCCTGCAAACAGTATGCGGTACACTCGGCTTTGCACAAAAATATCCGGTACCATGCATTGCCCTGGATTCTCAT
GGAGATACTCCGCTTGAAGGCGAAGCACTGGAGACAGTATTAACTCGCTATAAACACCCTTTTAGCGCCACCATCGGCGA
GGAAGCACATCGTAAAGGATTACCGAACGAAATGAACTATGTAATGGATTATCGGTTAATATATTGCCTGCGCAACGGAC
TGCCCCTTGACATGGACGTTTATGATGCAGCCGAATGGTCGTGTATCACCGAATTAAGCGAGAAGTCAGTATTGAACGGA
AGTATTCCTGTAGAAATACCGGATTTCACCAGAGGTGTCTGGAAAAAACACAAACATTAG

Upstream 100 bases:

>100_bases
CCAAGCTGAGGGTCGCGGGTTTGAGCCCCGTCTTCCGCTCTTCAAAGAGAATCTGAGAAATTAGATTCTCTTTTTTGTAT
AACTTTAAACCTCTAAGAAC

Downstream 100 bases:

>100_bases
ATTTTACCTATTTACCCCAATTAAACTATAAAAAAACACATGAGAACATTCCTATCATTAAAGACATGCTTACTATCTGC
ACTTTTACTTTGCGTAAACA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MEDSPTQSHVLQLAHPPIPIVRIGIIGLGNRGLLTLQRYLQIEGTEIKALSEIREGNLNKAQLILKEAKHPEATGYTGPG
GWRKMCECNDLDLIFICTDWLTHTPMATYAMECGKHVAIEVPAAMNIAECWQLVDTAEKTRRHCIMLENCCYDPFALTTL
EMARQGVLGEIMHVEGAYIHDLRSMYFAEESEGGYHNHWGKRYSIEHTGNPYPTHGLGPACQILDIHRNDRMEYLVSMST
HQAGMSEYARKRFGENSPEARQKYKLGDVNTTLIHTAKGKTIMLQYNVSTPRPYSRLQTVCGTLGFAQKYPVPCIALDSH
GDTPLEGEALETVLTRYKHPFSATIGEEAHRKGLPNEMNYVMDYRLIYCLRNGLPLDMDVYDAAEWSCITELSEKSVLNG
SIPVEIPDFTRGVWKKHKH

Sequences:

>Translated_419_residues
MEDSPTQSHVLQLAHPPIPIVRIGIIGLGNRGLLTLQRYLQIEGTEIKALSEIREGNLNKAQLILKEAKHPEATGYTGPG
GWRKMCECNDLDLIFICTDWLTHTPMATYAMECGKHVAIEVPAAMNIAECWQLVDTAEKTRRHCIMLENCCYDPFALTTL
EMARQGVLGEIMHVEGAYIHDLRSMYFAEESEGGYHNHWGKRYSIEHTGNPYPTHGLGPACQILDIHRNDRMEYLVSMST
HQAGMSEYARKRFGENSPEARQKYKLGDVNTTLIHTAKGKTIMLQYNVSTPRPYSRLQTVCGTLGFAQKYPVPCIALDSH
GDTPLEGEALETVLTRYKHPFSATIGEEAHRKGLPNEMNYVMDYRLIYCLRNGLPLDMDVYDAAEWSCITELSEKSVLNG
SIPVEIPDFTRGVWKKHKH
>Mature_419_residues
MEDSPTQSHVLQLAHPPIPIVRIGIIGLGNRGLLTLQRYLQIEGTEIKALSEIREGNLNKAQLILKEAKHPEATGYTGPG
GWRKMCECNDLDLIFICTDWLTHTPMATYAMECGKHVAIEVPAAMNIAECWQLVDTAEKTRRHCIMLENCCYDPFALTTL
EMARQGVLGEIMHVEGAYIHDLRSMYFAEESEGGYHNHWGKRYSIEHTGNPYPTHGLGPACQILDIHRNDRMEYLVSMST
HQAGMSEYARKRFGENSPEARQKYKLGDVNTTLIHTAKGKTIMLQYNVSTPRPYSRLQTVCGTLGFAQKYPVPCIALDSH
GDTPLEGEALETVLTRYKHPFSATIGEEAHRKGLPNEMNYVMDYRLIYCLRNGLPLDMDVYDAAEWSCITELSEKSVLNG
SIPVEIPDFTRGVWKKHKH

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1092_BACTN (Q89ZW9)

Other databases:

- EMBL:   AE015928
- RefSeq:   NP_813163.1
- ProteinModelPortal:   Q89ZW9
- SMR:   Q89ZW9
- GeneID:   1074082
- GenomeReviews:   AE015928_GR
- KEGG:   bth:BT_4252
- NMPDR:   fig|226186.1.peg.4250
- HOGENOM:   HBG611861
- OMA:   CITELSE
- ProtClustDB:   CLSK2520893
- BioCyc:   BTHE226186:BT_4252-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 47309; Mature: 47309

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: BINDING 52-52 BINDING 149-149 BINDING 178-178 BINDING 212-212 BINDING 294-294

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDSPTQSHVLQLAHPPIPIVRIGIIGLGNRGLLTLQRYLQIEGTEIKALSEIREGNLNK
CCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCH
AQLILKEAKHPEATGYTGPGGWRKMCECNDLDLIFICTDWLTHTPMATYAMECGKHVAIE
HHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECHHHHCCCHHHHHHHCCCEEEEE
VPAAMNIAECWQLVDTAEKTRRHCIMLENCCYDPFALTTLEMARQGVLGEIMHVEGAYIH
CCCCCCHHHHHHHHHHHHHHHHHEEEHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHH
DLRSMYFAEESEGGYHNHWGKRYSIEHTGNPYPTHGLGPACQILDIHRNDRMEYLVSMST
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
HQAGMSEYARKRFGENSPEARQKYKLGDVNTTLIHTAKGKTIMLQYNVSTPRPYSRLQTV
HHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHH
CGTLGFAQKYPVPCIALDSHGDTPLEGEALETVLTRYKHPFSATIGEEAHRKGLPNEMNY
HHHHCCHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCHHHHHCCCCHHHHH
VMDYRLIYCLRNGLPLDMDVYDAAEWSCITELSEKSVLNGSIPVEIPDFTRGVWKKHKH
HHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCC
>Mature Secondary Structure
MEDSPTQSHVLQLAHPPIPIVRIGIIGLGNRGLLTLQRYLQIEGTEIKALSEIREGNLNK
CCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCH
AQLILKEAKHPEATGYTGPGGWRKMCECNDLDLIFICTDWLTHTPMATYAMECGKHVAIE
HHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECHHHHCCCHHHHHHHCCCEEEEE
VPAAMNIAECWQLVDTAEKTRRHCIMLENCCYDPFALTTLEMARQGVLGEIMHVEGAYIH
CCCCCCHHHHHHHHHHHHHHHHHEEEHHHCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHH
DLRSMYFAEESEGGYHNHWGKRYSIEHTGNPYPTHGLGPACQILDIHRNDRMEYLVSMST
HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
HQAGMSEYARKRFGENSPEARQKYKLGDVNTTLIHTAKGKTIMLQYNVSTPRPYSRLQTV
HHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHH
CGTLGFAQKYPVPCIALDSHGDTPLEGEALETVLTRYKHPFSATIGEEAHRKGLPNEMNY
HHHHCCHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCHHHHHCCCCHHHHH
VMDYRLIYCLRNGLPLDMDVYDAAEWSCITELSEKSVLNGSIPVEIPDFTRGVWKKHKH
HHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663928