| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349654
Identifier: 29349654
GI number: 29349654
Start: 5594092
End: 5596020
Strand: Reverse
Name: 29349654
Synonym: BT_4246
Alternate gene names: NA
Gene position: 5596020-5594092 (Counterclockwise)
Preceding gene: 29349655
Following gene: 29349653
Centisome position: 89.39
GC content: 43.18
Gene sequence:
>1929_bases ATGAAACTAACACGCATCTTTCAAAATATAAGTATAGCAGTTATTATCACTGCATTGGGCTTAACCTCATGTGATTATCT AGACGTCGTTCCACCCGAACAACCCAATATCGATGACGCAATGTCAAGCCCCACCCGAGCTTTAGGATTTCTTTATTCCT GTTATGGAGGTGTCAGTACAGACTTACCCAGTGCCTATCTGGGGGAAATAAACTCTACGACAGACGAATATGTATTACCT TATTCATGGAACACAGACGGTTATTGGGGCGCCTATGCATTTAACACTGCATCATCCACTAACCAAGACTGGCTATGGGG AACTACTTACCAATATATAGGACAATGTTATCTGTTTTTACAAAAGTTGGAAAATGCGGGAAGCGACATTGCATCTGATG CAGAAAAGGAACAATGGAGAGCCGAATGCCAATTCCTGGTAGCTTATTACCACTTCGCTACTTTAAGAAGATATGGTCCC ATCCCAATTACAGACTCGTACATTCCGATGGATACCCCAACGTCAGAGTATAATGGACGTTTTCACTTTGACTATTGTGT AGACTGGATTGCGAACCAGCTGGATGAAGCCGCCAAAGTACTTCCTGCCAACCGCACCGTTACCAATGAATGGGGTCGCG CTACATCTACTATAGCTAAAGCTGTAAAAGCACGTTTGTTACTTTATGCCGCATCTCCTTTATGGAACGGAAGTTTCCCC TACCCTAACTGGCAGAATGAGAATTTCGAGACTCCGGGTTACGGTAAAGCTTTGGTAAGCAATACTTATGACAAGAGCAA ATGGGAAAGAGCACTGGCCGCATGTCAGGAAGCACTTACATTAGCTACAACTTCCGGTGACCGTGAACTTTACGATGACG ACGAATATTACTCCCGACAATCCCTGAACTTACCTTTTGTTCCCGGAGTAGCAGACGTGGAAGATAATAAAGAATTCCTG AAAAACGTAATGAAGATGCGCTATGCCGTAAGTACACGTGAATCTGAAGGAAACAAAGAAATTATCTGGGGATTATCCAA CCAGTTTGATTTTTATTCCCGTTATCCGCTTCGTATTCTGAAGAAATCGGATGGAACATGGCATGCTGGTTATAGTGGTG TATCTCCTACATTATATACGTTCGAACATTTCTATACAGCTAACGGGAAACTACCTGAAAAAGACCTTGACTTTACTCCT TCCTCTGAATGGTTTGAGTCAGCAGGTATCTCTTCACGGGAAGACATTATCAAATTGAATGTGGGTCGTGAACCTCGTTT CTATGCATGGATGGCTTTTGACGGTGGTGACTACGGAACTAAATTTGCGGCCGGTTCTCCTCTGAAACTGGAAATGAGGA ATTCGGAAATGCACGGTTACAATCCGTCTCTATTTAATCGTGACCATAGTGTCACAGGGTTCCTGACACAAAAGTTTGTT GATCCGGTAACTGAATTCTATACAGCCGGCGGTTCTACAAGCGGAACAAGCGCACCTACTATCTTATTCCGCCTGGCCGA ACTCTACCTAAACGTAGCAGAATGCCATGCAGCATTAGGAAATACACAGGAAGCCATTGATGCACTAAATCCTGTTCGTG AACGTGCCGGAATCCCTAAATTAACATTGGCTGATATCACAAATAATATGACAATAAAAGACTGGGTACACAATGAACGT TTTGTTGAATTATGGAACGAAGGTCACCGCTTCTTCGATGTCCGCCGTTGGGCAGAAGGAGCCAAGTACTTTGGAGCAAA CAAACGGGAAGGATTGAATGCAGAAGTTCAAAGTCCCACATTCGAAGAATTTAATAAACGAACTACAGTTGATGCACCTT ATGTGTGGGAAAACCGCATGTACCTGAATCCGGTATTCTACAACGAAGTATACAAAAATCCGCAAATGGTACAAGCACCC GGATATTAA
Upstream 100 bases:
>100_bases CCTTTGGGATCCTGAACTGTCTTCTTGGAACAGTTATCCTATGCAAAAAACTGTCAATGTCGGAATTCAACTTCAGTTCT AATTTATTATGAGAAAAAAT
Downstream 100 bases:
>100_bases TTATTTTTTATTCATTCATAACAATATAGAATATATATGAAACATATATCAATAGCATTGTGTTTGTGCGGGATGATTCT GATGAATACTTCCTGCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 642; Mature: 642
Protein sequence:
>642_residues MKLTRIFQNISIAVIITALGLTSCDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLP YSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGP IPITDSYIPMDTPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRTVTNEWGRATSTIAKAVKARLLLYAASPLWNGSFP YPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFL KNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTP SSEWFESAGISSREDIIKLNVGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFV DPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNMTIKDWVHNER FVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAP GY
Sequences:
>Translated_642_residues MKLTRIFQNISIAVIITALGLTSCDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLP YSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGP IPITDSYIPMDTPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRTVTNEWGRATSTIAKAVKARLLLYAASPLWNGSFP YPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFL KNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTP SSEWFESAGISSREDIIKLNVGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFV DPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNMTIKDWVHNER FVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAP GY >Mature_642_residues MKLTRIFQNISIAVIITALGLTSCDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLP YSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGP IPITDSYIPMDTPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRTVTNEWGRATSTIAKAVKARLLLYAASPLWNGSFP YPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFL KNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTP SSEWFESAGISSREDIIKLNVGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFV DPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNMTIKDWVHNER FVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAP GY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72992; Mature: 72992
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTRIFQNISIAVIITALGLTSCDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVST CCHHHHHHCCHHEEHHHHHCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCC DLPSAYLGEINSTTDEYVLPYSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFL CCCCHHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH QKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEYNGR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE FHFDYCVDWIANQLDEAAKVLPANRTVTNEWGRATSTIAKAVKARLLLYAASPLWNGSFP EEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC YPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQ CCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH SLNLPFVPGVADVEDNKEFLKNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRIL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCEEEE KKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTPSSEWFESAGISSREDIIKLN ECCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEE VGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFV CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHH DPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPK HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC LTLADITNNMTIKDWVHNERFVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPT EEEECCCCCCEEHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAPGY HHHHCCCCCCCCCEEECCCEEECCHHHHHHHCCCCEEECCCC >Mature Secondary Structure MKLTRIFQNISIAVIITALGLTSCDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVST CCHHHHHHCCHHEEHHHHHCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCC DLPSAYLGEINSTTDEYVLPYSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFL CCCCHHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH QKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEYNGR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE FHFDYCVDWIANQLDEAAKVLPANRTVTNEWGRATSTIAKAVKARLLLYAASPLWNGSFP EEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC YPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQ CCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH SLNLPFVPGVADVEDNKEFLKNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRIL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCEEEE KKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTPSSEWFESAGISSREDIIKLN ECCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEE VGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFV CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHH DPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPK HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC LTLADITNNMTIKDWVHNERFVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPT EEEECCCCCCEEHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAPGY HHHHCCCCCCCCCEEECCCEEECCHHHHHHHCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA