| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349653
Identifier: 29349653
GI number: 29349653
Start: 5592763
End: 5594055
Strand: Reverse
Name: 29349653
Synonym: BT_4245
Alternate gene names: NA
Gene position: 5594055-5592763 (Counterclockwise)
Preceding gene: 29349654
Following gene: 29349652
Centisome position: 89.36
GC content: 41.07
Gene sequence:
>1293_bases ATGAAACATATATCAATAGCATTGTGTTTGTGCGGGATGATTCTGATGAATACTTCCTGCGACAATTATGACGATACCTA TCCGCAGGAATATGAGAAAATACTATCACTGCAGACCACCGGTGAGCAAGCCGTAGATCTTTATAAAACAGGAGAGGCTA CTAACTATTCAATAACGGTCATTAAATCCGGAAGTCAACCCACATTGACAGCTTCTGCCCATATCGGTGCAATGGATGCA GTCAATTTTGAGAAGTATATCTCCGAGAGAGGTTTGGACTATGTGGCAATGCCTGCCAATTGTTATTCGTTCAACATGGA AGAACTCGATTATTCTTCTGCTGAAACCTATAAGATCATCAATTTACAGTTGAATACCAACGAGATAGAAATCTTTGAGC AGACTCTTGAAGAGGGACAAACGTGTGTCCTTCCAATCATGCTGACCAGTACATCCGATTCCATCCTGGCGGATAAAAAC ACATTAGTTCTGAAACCGGAGATTATTACTCCCTCTCTTTCAGTCACTGAATCCAGTTCAGGAACCGTGACTAAATATCT GCCCCAAAGTGGAGGCACCATTGCTCTTGATTTAGGATTGCAAGTCGAAAACCAATGGAATTTCACCTGTAAAGTAGCAA TTGATGAAACTACTACTACCTTAGAAGGAGCAACGTTGGTTTCGGATATCATCTCATTTGAGCCTGGAAACACATCTTCT GTTCAAGTTAATATCCCTAAGTTTACGAAGACCTCCGGAAATGTGGGTATAAAGATTCTGGAAATTAATGGAAAAGACGG TTTCGAATTCGACACGAATCCATTTATACTGGTTGCATCTGTTGAAAAATACAGTCTGACAGCGGACATGCTTTCCAGTA ATGCAATAGAACCGTCAGAAGGTTCCTTAGCTAATTTATTGGATGGAGATATAGGTACCTACTTCCACAGCGCGTGGAGT GTATCAATTGCCGACAAGCATTATGTTCAAGTAAAATTGCCCGTATCAACTAAGACATTCCGTTTCACCTATACAAACAG ATCAAATAACGGAAATGCCGCTTTGGCATGGTTCAATTTATATACAGGAACGAATGAGAACAATTTACAACTTTACAAGC GTTTTGCGTGGGATGAAGATGGTCTCCCGTCAGGTGCTGCAGGAGTTTATGTTTCTCCCGACGTTTCAATAGACAATGCT GCCAACACCTTACGCTTTAAATGTGAAAGCAACTGGACCGGTGGTTCCTTCTTTGTATGGAGCGAATTTAGTCTGTTCAT ACTGTCCGAATAA
Upstream 100 bases:
>100_bases GAATCCGGTATTCTACAACGAAGTATACAAAAATCCGCAAATGGTACAAGCACCCGGATATTAATTATTTTTTATTCATT CATAACAATATAGAATATAT
Downstream 100 bases:
>100_bases TAAATGAGAGACAAAGGGTGAGTCAGACTTTTGATTCACCCTTTTATACCTCATCTATCTTAAAAACTAATACAGCAAAA AAATGACAATAAAAAGATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MKHISIALCLCGMILMNTSCDNYDDTYPQEYEKILSLQTTGEQAVDLYKTGEATNYSITVIKSGSQPTLTASAHIGAMDA VNFEKYISERGLDYVAMPANCYSFNMEELDYSSAETYKIINLQLNTNEIEIFEQTLEEGQTCVLPIMLTSTSDSILADKN TLVLKPEIITPSLSVTESSSGTVTKYLPQSGGTIALDLGLQVENQWNFTCKVAIDETTTTLEGATLVSDIISFEPGNTSS VQVNIPKFTKTSGNVGIKILEINGKDGFEFDTNPFILVASVEKYSLTADMLSSNAIEPSEGSLANLLDGDIGTYFHSAWS VSIADKHYVQVKLPVSTKTFRFTYTNRSNNGNAALAWFNLYTGTNENNLQLYKRFAWDEDGLPSGAAGVYVSPDVSIDNA ANTLRFKCESNWTGGSFFVWSEFSLFILSE
Sequences:
>Translated_430_residues MKHISIALCLCGMILMNTSCDNYDDTYPQEYEKILSLQTTGEQAVDLYKTGEATNYSITVIKSGSQPTLTASAHIGAMDA VNFEKYISERGLDYVAMPANCYSFNMEELDYSSAETYKIINLQLNTNEIEIFEQTLEEGQTCVLPIMLTSTSDSILADKN TLVLKPEIITPSLSVTESSSGTVTKYLPQSGGTIALDLGLQVENQWNFTCKVAIDETTTTLEGATLVSDIISFEPGNTSS VQVNIPKFTKTSGNVGIKILEINGKDGFEFDTNPFILVASVEKYSLTADMLSSNAIEPSEGSLANLLDGDIGTYFHSAWS VSIADKHYVQVKLPVSTKTFRFTYTNRSNNGNAALAWFNLYTGTNENNLQLYKRFAWDEDGLPSGAAGVYVSPDVSIDNA ANTLRFKCESNWTGGSFFVWSEFSLFILSE >Mature_430_residues MKHISIALCLCGMILMNTSCDNYDDTYPQEYEKILSLQTTGEQAVDLYKTGEATNYSITVIKSGSQPTLTASAHIGAMDA VNFEKYISERGLDYVAMPANCYSFNMEELDYSSAETYKIINLQLNTNEIEIFEQTLEEGQTCVLPIMLTSTSDSILADKN TLVLKPEIITPSLSVTESSSGTVTKYLPQSGGTIALDLGLQVENQWNFTCKVAIDETTTTLEGATLVSDIISFEPGNTSS VQVNIPKFTKTSGNVGIKILEINGKDGFEFDTNPFILVASVEKYSLTADMLSSNAIEPSEGSLANLLDGDIGTYFHSAWS VSIADKHYVQVKLPVSTKTFRFTYTNRSNNGNAALAWFNLYTGTNENNLQLYKRFAWDEDGLPSGAAGVYVSPDVSIDNA ANTLRFKCESNWTGGSFFVWSEFSLFILSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47195; Mature: 47195
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHISIALCLCGMILMNTSCDNYDDTYPQEYEKILSLQTTGEQAVDLYKTGEATNYSITV CCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECCCCHHEEEEECCCCCCEEEEE IKSGSQPTLTASAHIGAMDAVNFEKYISERGLDYVAMPANCYSFNMEELDYSSAETYKII EECCCCCEEEEEECCCCEECCCHHHHHHHCCCCEEEECCCEEECCHHHCCCCCCCEEEEE NLQLNTNEIEIFEQTLEEGQTCVLPIMLTSTSDSILADKNTLVLKPEIITPSLSVTESSS EEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCEEEEECEEECCCCEEECCCC GTVTKYLPQSGGTIALDLGLQVENQWNFTCKVAIDETTTTLEGATLVSDIISFEPGNTSS CCEEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHCCCCCCCE VQVNIPKFTKTSGNVGIKILEINGKDGFEFDTNPFILVASVEKYSLTADMLSSNAIEPSE EEEECCCEEECCCCCEEEEEEECCCCCCEECCCCEEEEEECCCEEEEHHHHHCCCCCCCC GSLANLLDGDIGTYFHSAWSVSIADKHYVQVKLPVSTKTFRFTYTNRSNNGNAALAWFNL CCCHHHHCCCHHHHEECEEEEEECCCEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEE YTGTNENNLQLYKRFAWDEDGLPSGAAGVYVSPDVSIDNAANTLRFKCESNWTGGSFFVW EECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCEEEEE SEFSLFILSE ECEEEEEEEC >Mature Secondary Structure MKHISIALCLCGMILMNTSCDNYDDTYPQEYEKILSLQTTGEQAVDLYKTGEATNYSITV CCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECCCCHHEEEEECCCCCCEEEEE IKSGSQPTLTASAHIGAMDAVNFEKYISERGLDYVAMPANCYSFNMEELDYSSAETYKII EECCCCCEEEEEECCCCEECCCHHHHHHHCCCCEEEECCCEEECCHHHCCCCCCCEEEEE NLQLNTNEIEIFEQTLEEGQTCVLPIMLTSTSDSILADKNTLVLKPEIITPSLSVTESSS EEEECCCHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCEEEEECEEECCCCEEECCCC GTVTKYLPQSGGTIALDLGLQVENQWNFTCKVAIDETTTTLEGATLVSDIISFEPGNTSS CCEEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHCCCCCCCE VQVNIPKFTKTSGNVGIKILEINGKDGFEFDTNPFILVASVEKYSLTADMLSSNAIEPSE EEEECCCEEECCCCCEEEEEEECCCCCCEECCCCEEEEEECCCEEEEHHHHHCCCCCCCC GSLANLLDGDIGTYFHSAWSVSIADKHYVQVKLPVSTKTFRFTYTNRSNNGNAALAWFNL CCCHHHHCCCHHHHEECEEEEEECCCEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEE YTGTNENNLQLYKRFAWDEDGLPSGAAGVYVSPDVSIDNAANTLRFKCESNWTGGSFFVW EECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCEEEEE SEFSLFILSE ECEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA