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The map label for this gene is ydgJ [C]

Identifier: 29349651

GI number: 29349651

Start: 5588470

End: 5589873

Strand: Reverse

Name: ydgJ [C]

Synonym: BT_4243

Alternate gene names: 29349651

Gene position: 5589873-5588470 (Counterclockwise)

Preceding gene: 29349652

Following gene: 29349650

Centisome position: 89.29

GC content: 46.01

Gene sequence:

>1404_bases
ATGAAGAAACTACTACTTAACACACTCATCGGTCTTGCATTGTTGACCTGCCAGACCAGTTTTGCTCAAAAGACAAAAGC
AAAGTTCTCTCCGATTAAAGTAGAAACTCCGGCTCGTCCGGCAAATCAGCAAGATGTAATCCAACTCGTTACTCCTAAAC
TTGAAACGGTTCGTGTAGGCTTTATCGGATTGGGAATGCGCGGTCCCGGTGCGGTTGAACGCTGGACACATATTCCGGGA
ACTCAGATTGTAGCTTTATGCGATCTTCTCCCCGAACGTGTTGAAAATGCTCAAAAGATACTGGAGAAAGCCGGTCTGCC
GAAAGCAGCTTCCTACGCAGGAGACGAAAAAGCATGGAAAAAGCTCTGCGAACGTGACGATATCGACGTGGTATACATAG
CTACAGACTGGAAACACCATGCAGACATGGGTGTATACGCTATGGAACATGGCAAACATGTAGCCATCGAAGTACCTGCC
GCTATGACACTGGATGAAATCTGGAAGCTAATCAACACTTCTGAAAAGACTCGCAAACACTGTATGCAACTGGAAAACTG
CGTATATGACTTCTTTGAACTGACTTCACTCAATATGGCACAACAAGGTGTATTCGGTGAGGTACTTCACGTAGAAGGTG
CTTATATACACAATCTGGAAGACTTCTGGCCGTATTACTGGAACAACTGGCGTATGGACTACAATCAGAAACATCGTGGT
GATGTATATGCAACTCATGGTATGGGCCCGGCTTGCCAGGTACTCAATATTCACCGTGGCGACCGTATGAAAACTCTCGT
AGCTATGGACACCAAAGCTGTGAACGGTCCGGCATACATTAAAAAGTCTACCGGAAAAGAAGTAAAAGACTTCCAGAACG
GAGACCAGACCACAACCCTCATCCGTACGGAGAACGGCAAAACAATGCTGATACAGCACAATGTAATGACTCCCCGTCCT
TACAGCCGTATGTACCAGGTAGTTGGAGCTGATGGCTATGCCAGCAAATATCCGATTGAGGAATACTGTCTGAGACCTAC
ACAAGTAGACTCTAATGATGTGCCGAATCACGAAAAGCTGAACGCACACGGTTCTGTATCTGAAGATGTAAAAAAAGCAT
TGATGGCTAAATACAAAGATCCTATTCACAAAGAACTGGAAGAAACTGCCAAGAAAGTAGGTGGACACGGCGGTATGGAT
TATATCATGGACTATCGTCTGGTATACTGTCTGCGCAATGGTTTGCCACTGGACATGGACGTTTACGACCTCGCAGAATG
GTGTTGTATGGCCGAACTGACCAGACTCTCCATCGAAAACGGTTCTGCTCCGGTAGAAGTTCCTGATTTCACCCGTGGCG
GATGGAACAAAGTGCAAGGTTACAGACATGCTTTTGCCGAATAA

Upstream 100 bases:

>100_bases
AATATCTACAATAATTACACTGGATTGATTAATTAATTAGTATTTTTGACACCGAAATGAAAAACCAATTAATAACCCCC
AATTAAAAATTAAAAGAAAG

Downstream 100 bases:

>100_bases
GCCATTATACCTTATTAATATATAAACTTACGGATAGCCAGACTGGGAAAAAGTCAGGTTATCCGTAAGTTCATGTTCGG
CACTTTACTGATTATTATAA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKKLLLNTLIGLALLTCQTSFAQKTKAKFSPIKVETPARPANQQDVIQLVTPKLETVRVGFIGLGMRGPGAVERWTHIPG
TQIVALCDLLPERVENAQKILEKAGLPKAASYAGDEKAWKKLCERDDIDVVYIATDWKHHADMGVYAMEHGKHVAIEVPA
AMTLDEIWKLINTSEKTRKHCMQLENCVYDFFELTSLNMAQQGVFGEVLHVEGAYIHNLEDFWPYYWNNWRMDYNQKHRG
DVYATHGMGPACQVLNIHRGDRMKTLVAMDTKAVNGPAYIKKSTGKEVKDFQNGDQTTTLIRTENGKTMLIQHNVMTPRP
YSRMYQVVGADGYASKYPIEEYCLRPTQVDSNDVPNHEKLNAHGSVSEDVKKALMAKYKDPIHKELEETAKKVGGHGGMD
YIMDYRLVYCLRNGLPLDMDVYDLAEWCCMAELTRLSIENGSAPVEVPDFTRGGWNKVQGYRHAFAE

Sequences:

>Translated_467_residues
MKKLLLNTLIGLALLTCQTSFAQKTKAKFSPIKVETPARPANQQDVIQLVTPKLETVRVGFIGLGMRGPGAVERWTHIPG
TQIVALCDLLPERVENAQKILEKAGLPKAASYAGDEKAWKKLCERDDIDVVYIATDWKHHADMGVYAMEHGKHVAIEVPA
AMTLDEIWKLINTSEKTRKHCMQLENCVYDFFELTSLNMAQQGVFGEVLHVEGAYIHNLEDFWPYYWNNWRMDYNQKHRG
DVYATHGMGPACQVLNIHRGDRMKTLVAMDTKAVNGPAYIKKSTGKEVKDFQNGDQTTTLIRTENGKTMLIQHNVMTPRP
YSRMYQVVGADGYASKYPIEEYCLRPTQVDSNDVPNHEKLNAHGSVSEDVKKALMAKYKDPIHKELEETAKKVGGHGGMD
YIMDYRLVYCLRNGLPLDMDVYDLAEWCCMAELTRLSIENGSAPVEVPDFTRGGWNKVQGYRHAFAE
>Mature_467_residues
MKKLLLNTLIGLALLTCQTSFAQKTKAKFSPIKVETPARPANQQDVIQLVTPKLETVRVGFIGLGMRGPGAVERWTHIPG
TQIVALCDLLPERVENAQKILEKAGLPKAASYAGDEKAWKKLCERDDIDVVYIATDWKHHADMGVYAMEHGKHVAIEVPA
AMTLDEIWKLINTSEKTRKHCMQLENCVYDFFELTSLNMAQQGVFGEVLHVEGAYIHNLEDFWPYYWNNWRMDYNQKHRG
DVYATHGMGPACQVLNIHRGDRMKTLVAMDTKAVNGPAYIKKSTGKEVKDFQNGDQTTTLIRTENGKTMLIQHNVMTPRP
YSRMYQVVGADGYASKYPIEEYCLRPTQVDSNDVPNHEKLNAHGSVSEDVKKALMAKYKDPIHKELEETAKKVGGHGGMD
YIMDYRLVYCLRNGLPLDMDVYDLAEWCCMAELTRLSIENGSAPVEVPDFTRGGWNKVQGYRHAFAE

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1091_BACTN (Q89ZX8)

Other databases:

- EMBL:   AE015928
- RefSeq:   NP_813154.1
- ProteinModelPortal:   Q89ZX8
- GeneID:   1071744
- GenomeReviews:   AE015928_GR
- KEGG:   bth:BT_4243
- NMPDR:   fig|226186.1.peg.4241
- HOGENOM:   HBG611861
- OMA:   TGSWRTY
- ProtClustDB:   CLSK2520892
- BioCyc:   BTHE226186:BT_4243-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 52832; Mature: 52832

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: BINDING 88-88 BINDING 186-186 BINDING 215-215 BINDING 231-231 BINDING 243-243 BINDING 321-321

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLLNTLIGLALLTCQTSFAQKTKAKFSPIKVETPARPANQQDVIQLVTPKLETVRVG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEE
FIGLGMRGPGAVERWTHIPGTQIVALCDLLPERVENAQKILEKAGLPKAASYAGDEKAWK
EEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
KLCERDDIDVVYIATDWKHHADMGVYAMEHGKHVAIEVPAAMTLDEIWKLINTSEKTRKH
HHHCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCHHHHHH
CMQLENCVYDFFELTSLNMAQQGVFGEVLHVEGAYIHNLEDFWPYYWNNWRMDYNQKHRG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHCCHHHCCEEECCCCCCCC
DVYATHGMGPACQVLNIHRGDRMKTLVAMDTKAVNGPAYIKKSTGKEVKDFQNGDQTTTL
CEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHCCCCCEEEE
IRTENGKTMLIQHNVMTPRPYSRMYQVVGADGYASKYPIEEYCLRPTQVDSNDVPNHEKL
EEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
NAHGSVSEDVKKALMAKYKDPIHKELEETAKKVGGHGGMDYIMDYRLVYCLRNGLPLDMD
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
VYDLAEWCCMAELTRLSIENGSAPVEVPDFTRGGWNKVQGYRHAFAE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKKLLLNTLIGLALLTCQTSFAQKTKAKFSPIKVETPARPANQQDVIQLVTPKLETVRVG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEE
FIGLGMRGPGAVERWTHIPGTQIVALCDLLPERVENAQKILEKAGLPKAASYAGDEKAWK
EEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHH
KLCERDDIDVVYIATDWKHHADMGVYAMEHGKHVAIEVPAAMTLDEIWKLINTSEKTRKH
HHHCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCHHHHHH
CMQLENCVYDFFELTSLNMAQQGVFGEVLHVEGAYIHNLEDFWPYYWNNWRMDYNQKHRG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHCCHHHCCEEECCCCCCCC
DVYATHGMGPACQVLNIHRGDRMKTLVAMDTKAVNGPAYIKKSTGKEVKDFQNGDQTTTL
CEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHHCCCCCEEEE
IRTENGKTMLIQHNVMTPRPYSRMYQVVGADGYASKYPIEEYCLRPTQVDSNDVPNHEKL
EEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
NAHGSVSEDVKKALMAKYKDPIHKELEETAKKVGGHGGMDYIMDYRLVYCLRNGLPLDMD
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
VYDLAEWCCMAELTRLSIENGSAPVEVPDFTRGGWNKVQGYRHAFAE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663928