| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29349652
Identifier: 29349652
GI number: 29349652
Start: 5590107
End: 5592680
Strand: Reverse
Name: 29349652
Synonym: BT_4244
Alternate gene names: NA
Gene position: 5592680-5590107 (Counterclockwise)
Preceding gene: 29349653
Following gene: 29349651
Centisome position: 89.33
GC content: 40.21
Gene sequence:
>2574_bases ATGACAATAAAAAGATTCATTACTAACCTGTTAGCCCTTTTTACTCTATTCACAGTTTCACTGGCATGCAAGGATACCGA AAAATCGATTATAAATAGCTCCTTCAGTATCAGTGAAGAATATCTGATACAAAATCTGGATAAATCAAGTACGTCTGTCC AGATTCCAATTAACACATCTATGGAGTTAGCTCAATGGAGTGTCTCTTATGAAGCAAACTGGCTACAATGCTCAAAACAA AAGACAGCAGCAGAAGGAACTTTCCTGAGAATTACAGTGAATGAAAATACAGGCGAAACCAAAAGAACAGCCAACATAAA AGTAACATCAACTACTGCTACCTATACTATCACCGTTAATCAATATGCCAAAGGCGAAGTAATTGTTGAGGGTGACATCA AGGTTACACCAACCGGAGGCAAAGCGAGTGAGCATCAGGAGGGACAGGATATTGAAAATACATATGATGGCAAATTTTCA ACTGATGGAGCTGCCCCTTTCCACACTCCGTGGGGACAATCCGCCAAATTCCCTGTCACGCTGGAATACTATTTTAAAGG AGATACGGAAATAGACTACTTAATTTATTATACACGATCCGGTAATGGAAACTTCGGAAAGGTCAAAGTATATACAACAA CCAATCCTGACCGATCAGATTATACATTACAGGGAGAATATGACTTTAAAGAGCAGAATGCTCCTTCCAAAGTTTCATTT TCAGAAGGCATAAAAGCGACCGGAATCAAATTCGAAGTATTAAGCGGTCTGGGTGATTTTGTAAGCTGTGATGAAATGGA ATTTTACAAAACAAATACGGATAAAACACTGGATAAACAACTTCTTACCGTATTCACCGATATAACTTGTACGGAAATAA AGAACAACGTCACCAACGAACAGATACAAGCTCTGCCAGACTATTTCGTCAGAATAGCAGAAGCGGTTCGTGACAATACA TACGACAAATGGGAAAAAGAATTTCGCATTCGCAGCTATGAACCATACAGTAATATTGCTGAATGGGCGGATAAATTAAT GACTAAGAAATATAGTGATCTCGACAATCCGACTGGTATATCCGTCAAGGCAGGAGACGATATCATCGTATTGGTTGGTG ACACATACGGACAGAATATTTCAATGCAGTGTATTTGGGAAACAGGAACAGAATACAAGCAAACTGCTTCTTCAGGCGAT GTCTATATGCTAAATCCCGGAGTCAACAAACTGACTATGAAAGGAGAAGGACAATTGTTTGTCATGTACAACACCGAACT GACTTCAAATACAGCAAAACCCATCAAAATTCACATACCACTCGGAAGTGGCACAGTGAACGGTTTCTTCGACCTGAAAG AACATAAGACAGACGAAAAATACGCTGAATTATTGAAAAAATCAACACACAAATACTTCTGCATACGCGGTGAAAAGATC ATGTTCTATTTCCACCGCAACAAATTATTGGAATATGTACCCAACAACATCCTCTCAGCCATCCATCTATGGGATAACAT TGTCGGCTGGCAACAAGAATTAATGGGAATTGACGATGTACGCCCATCACAAGTCAACAACCATTTATTTGCCATCTCAC CGGAAGGAAGTTATATGTGGGCTTCTGACTATCAAATCGGATTTGTCTATACCTACTTAGGCAATATCTTGTTGGAAGAT AATGTAATGGCGGCGGAAGATAACGCGTGGGGACCAGCTCATGAAATTGGCCATGTTCATCAGGCAGCTATTAACTGGGC CAGTTCTACCGAATCATCTAATAATCTGTTCTCTAATTTCATTATCTATAAATTAGGAAAATACAAATCGCGTGGTAACG GGTTAGGAAGCGTTGCAACCGCCCGTTATGCCAACGGGCAGGCTTGGTATAATATGGGAGACGCAACCCACCAGAACGAA GACACAGAAACGCATATGAGAATGAACTGGCAACTATGGATTTACTATCACCGATGCGAATATAAAACAGATTTCTGGCA AACACTTTTCAAACTGATGCGTGAAGTGAATATGACCGAAGGTGAAGATCCCGGGAAAAAGCAACTTGAATTTGCCAAAA TGGCAAGTAAAGCCGCCAATCAGAACCTGACAGACTTTTTCGAGATGTGGGGATTCTTCGAACCTGTCAATACGACTATC GAACAGTATGGAACATACAAATACTATGTAAGTGATGCGATGATTCGGGAAGCAAAAGAATACATGGCACAATTCCCTGC CCCGAAACATGCTTTCCAATACATTGAAGACAGAAAGAAAAGTGAGTTTCCATCGAATGACTACCGCTATTCGGCAGTCG GAGATGTCGGATATTACACTCAATTCAAAGAAAATCAGAAGATAACCAAAGCTATCACGGCAGAGCTGGCAGGACGCAAG GTCTCCATCCAAAACGGAGATGAAGCTGTGGCTTTTGAACTCAGAGAGAATGATGAAAATGGAAAATTACTTTATTTTTC TACCTTCACGACTTTCGAGATTCCTTCATCTATATTGATGGTGAATGCCAAATTATATGCCGTACAAGCTGACGGAAAAC GTATTCTGTTATAA
Upstream 100 bases:
>100_bases TTCATACTGTCCGAATAATAAATGAGAGACAAAGGGTGAGTCAGACTTTTGATTCACCCTTTTATACCTCATCTATCTTA AAAACTAATACAGCAAAAAA
Downstream 100 bases:
>100_bases GAATAATTTAACTTAACACACATTACAGATGTAGAAACGGCATCGCTCACTGTTCGGGCGATGCCGAAAATATCATTATA ACATAGCGAATAGTGCGACT
Product: hypothetical protein
Products: NA
Alternate protein names: F5/8 Type C Domain-Containing Protein; Lipoprotein; S-Layer Domain-Containing Protein
Number of amino acids: Translated: 857; Mature: 856
Protein sequence:
>857_residues MTIKRFITNLLALFTLFTVSLACKDTEKSIINSSFSISEEYLIQNLDKSSTSVQIPINTSMELAQWSVSYEANWLQCSKQ KTAAEGTFLRITVNENTGETKRTANIKVTSTTATYTITVNQYAKGEVIVEGDIKVTPTGGKASEHQEGQDIENTYDGKFS TDGAAPFHTPWGQSAKFPVTLEYYFKGDTEIDYLIYYTRSGNGNFGKVKVYTTTNPDRSDYTLQGEYDFKEQNAPSKVSF SEGIKATGIKFEVLSGLGDFVSCDEMEFYKTNTDKTLDKQLLTVFTDITCTEIKNNVTNEQIQALPDYFVRIAEAVRDNT YDKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGISVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGD VYMLNPGVNKLTMKGEGQLFVMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKI MFYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMWASDYQIGFVYTYLGNILLED NVMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNFIIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNE DTETHMRMNWQLWIYYHRCEYKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTI EQYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYTQFKENQKITKAITAELAGRK VSIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILMVNAKLYAVQADGKRILL
Sequences:
>Translated_857_residues MTIKRFITNLLALFTLFTVSLACKDTEKSIINSSFSISEEYLIQNLDKSSTSVQIPINTSMELAQWSVSYEANWLQCSKQ KTAAEGTFLRITVNENTGETKRTANIKVTSTTATYTITVNQYAKGEVIVEGDIKVTPTGGKASEHQEGQDIENTYDGKFS TDGAAPFHTPWGQSAKFPVTLEYYFKGDTEIDYLIYYTRSGNGNFGKVKVYTTTNPDRSDYTLQGEYDFKEQNAPSKVSF SEGIKATGIKFEVLSGLGDFVSCDEMEFYKTNTDKTLDKQLLTVFTDITCTEIKNNVTNEQIQALPDYFVRIAEAVRDNT YDKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGISVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGD VYMLNPGVNKLTMKGEGQLFVMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKI MFYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMWASDYQIGFVYTYLGNILLED NVMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNFIIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNE DTETHMRMNWQLWIYYHRCEYKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTI EQYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYTQFKENQKITKAITAELAGRK VSIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILMVNAKLYAVQADGKRILL >Mature_856_residues TIKRFITNLLALFTLFTVSLACKDTEKSIINSSFSISEEYLIQNLDKSSTSVQIPINTSMELAQWSVSYEANWLQCSKQK TAAEGTFLRITVNENTGETKRTANIKVTSTTATYTITVNQYAKGEVIVEGDIKVTPTGGKASEHQEGQDIENTYDGKFST DGAAPFHTPWGQSAKFPVTLEYYFKGDTEIDYLIYYTRSGNGNFGKVKVYTTTNPDRSDYTLQGEYDFKEQNAPSKVSFS EGIKATGIKFEVLSGLGDFVSCDEMEFYKTNTDKTLDKQLLTVFTDITCTEIKNNVTNEQIQALPDYFVRIAEAVRDNTY DKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGISVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGDV YMLNPGVNKLTMKGEGQLFVMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKIM FYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMWASDYQIGFVYTYLGNILLEDN VMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNFIIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNED TETHMRMNWQLWIYYHRCEYKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTIE QYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYTQFKENQKITKAITAELAGRKV SIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILMVNAKLYAVQADGKRILL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97695; Mature: 97564
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKRFITNLLALFTLFTVSLACKDTEKSIINSSFSISEEYLIQNLDKSSTSVQIPINTS CCHHHHHHHHHHHHHHHHHHHEECCHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCC MELAQWSVSYEANWLQCSKQKTAAEGTFLRITVNENTGETKRTANIKVTSTTATYTITVN CEEEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEE QYAKGEVIVEGDIKVTPTGGKASEHQEGQDIENTYDGKFSTDGAAPFHTPWGQSAKFPVT CCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE LEYYFKGDTEIDYLIYYTRSGNGNFGKVKVYTTTNPDRSDYTLQGEYDFKEQNAPSKVSF EEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCH SEGIKATGIKFEVLSGLGDFVSCDEMEFYKTNTDKTLDKQLLTVFTDITCTEIKNNVTNE HCCCEECCEEEEEHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHCCCCHH QIQALPDYFVRIAEAVRDNTYDKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGI HHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCE SVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGDVYMLNPGVNKLTMKGEGQLF EEECCCCEEEEEECCCCCCEEEEEEECCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEE VMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKI EEEECEECCCCCCCEEEEEECCCCCCCCEEECHHCCCHHHHHHHHHHCCCEEEEEECCEE MFYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMW EEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCEEEEECCCCCEEE ASDYQIGFVYTYLGNILLEDNVMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNF ECCCEEEEEEHHHCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHE IIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNEDTETHMRMNWQLWIYYHRCE EEEEECCCCCCCCCCCCHHEEEECCCCEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEEC YKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTI CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH EQYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYT HHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH QFKENQKITKAITAELAGRKVSIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILM HHCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCEEEE VNAKLYAVQADGKRILL EEEEEEEEECCCCEECC >Mature Secondary Structure TIKRFITNLLALFTLFTVSLACKDTEKSIINSSFSISEEYLIQNLDKSSTSVQIPINTS CHHHHHHHHHHHHHHHHHHHEECCHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCC MELAQWSVSYEANWLQCSKQKTAAEGTFLRITVNENTGETKRTANIKVTSTTATYTITVN CEEEEEEEECCCCCEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEE QYAKGEVIVEGDIKVTPTGGKASEHQEGQDIENTYDGKFSTDGAAPFHTPWGQSAKFPVT CCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE LEYYFKGDTEIDYLIYYTRSGNGNFGKVKVYTTTNPDRSDYTLQGEYDFKEQNAPSKVSF EEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCH SEGIKATGIKFEVLSGLGDFVSCDEMEFYKTNTDKTLDKQLLTVFTDITCTEIKNNVTNE HCCCEECCEEEEEHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHCCCCHH QIQALPDYFVRIAEAVRDNTYDKWEKEFRIRSYEPYSNIAEWADKLMTKKYSDLDNPTGI HHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCE SVKAGDDIIVLVGDTYGQNISMQCIWETGTEYKQTASSGDVYMLNPGVNKLTMKGEGQLF EEECCCCEEEEEECCCCCCEEEEEEECCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEE VMYNTELTSNTAKPIKIHIPLGSGTVNGFFDLKEHKTDEKYAELLKKSTHKYFCIRGEKI EEEECEECCCCCCCEEEEEECCCCCCCCEEECHHCCCHHHHHHHHHHCCCEEEEEECCEE MFYFHRNKLLEYVPNNILSAIHLWDNIVGWQQELMGIDDVRPSQVNNHLFAISPEGSYMW EEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCEEEEECCCCCEEE ASDYQIGFVYTYLGNILLEDNVMAAEDNAWGPAHEIGHVHQAAINWASSTESSNNLFSNF ECCCEEEEEEHHHCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHE IIYKLGKYKSRGNGLGSVATARYANGQAWYNMGDATHQNEDTETHMRMNWQLWIYYHRCE EEEEECCCCCCCCCCCCHHEEEECCCCEEEECCCCCCCCCCCCEEEEEEEEEEEEEEEEC YKTDFWQTLFKLMREVNMTEGEDPGKKQLEFAKMASKAANQNLTDFFEMWGFFEPVNTTI CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH EQYGTYKYYVSDAMIREAKEYMAQFPAPKHAFQYIEDRKKSEFPSNDYRYSAVGDVGYYT HHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH QFKENQKITKAITAELAGRKVSIQNGDEAVAFELRENDENGKLLYFSTFTTFEIPSSILM HHCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCEEEE VNAKLYAVQADGKRILL EEEEEEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA