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The map label for this gene is rpoE [C]

Identifier: 29349401

GI number: 29349401

Start: 5202354

End: 5202908

Strand: Reverse

Name: rpoE [C]

Synonym: BT_3993

Alternate gene names: 29349401

Gene position: 5202908-5202354 (Counterclockwise)

Preceding gene: 29349402

Following gene: 29349400

Centisome position: 83.11

GC content: 45.77

Gene sequence:

>555_bases
ATGAATGAAAACTTCGACTTAACCTACAAAGCTCTATTCCGCAGGTACTACCCCAGCCTGATATTCTATGCCACCCGACT
GGTGGGAGAAGAAGAGGCGGAGGATGTAGTGCAGGACGTGTTCGTAGAGCTTTGGAAACGAAAAGACAGCATAGAGATAG
GAGAGCAGATTCAGGCTTTCCTCTATCGTGCTGTCTATACACGTGCCCTTAACGTATTGAAACATCGTAATGTAGAAGAT
GGCTATTGCGCCGCCATGGAAGAGATAAACCGGAGGCGTGCAGAGTTTTATCAGCCGGACAATAACGAAGTGATCCGCAA
GATCGAAGACCAGGAATTGCGGAAAGAGATTCACGATGCGATCAATGAGCTTCCGGACAAGTGCAAAGAAGTTTTCAAGC
TCAGCTATCTGCACGACATGAAAAATAAGGAGATAGCCGATGTACTGGGAGTTTCACTCCGCACGGTAGAGGCACATATG
TATAAGGCTTTGAAGTTCCTGCGAAATCGTCTCGGACATCTTTGGTTCATTCTCCTCTTATTTTTATTGGATTAA

Upstream 100 bases:

>100_bases
CGGTACCACCGTCGAATTTGAAATGGGGAATACTCCCTTAGTGGAAGTCGAATTTGAAGAACAGACCCAGTAGGTCCACC
TAAACTAATCTATCGGAAAA

Downstream 100 bases:

>100_bases
AGATAAGTGTTTTTGGGGTTTCAGTTGTATTACTTATATGAAGGAAAAGAAAATGAGAAATCTGAGCGAAGAAATAATAA
ACAAATATCTGACTGGTCAG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-H Factor; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Subfamily; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor; ECF Family RNA Polymerase Sigma Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNENFDLTYKALFRRYYPSLIFYATRLVGEEEAEDVVQDVFVELWKRKDSIEIGEQIQAFLYRAVYTRALNVLKHRNVED
GYCAAMEEINRRRAEFYQPDNNEVIRKIEDQELRKEIHDAINELPDKCKEVFKLSYLHDMKNKEIADVLGVSLRTVEAHM
YKALKFLRNRLGHLWFILLLFLLD

Sequences:

>Translated_184_residues
MNENFDLTYKALFRRYYPSLIFYATRLVGEEEAEDVVQDVFVELWKRKDSIEIGEQIQAFLYRAVYTRALNVLKHRNVED
GYCAAMEEINRRRAEFYQPDNNEVIRKIEDQELRKEIHDAINELPDKCKEVFKLSYLHDMKNKEIADVLGVSLRTVEAHM
YKALKFLRNRLGHLWFILLLFLLD
>Mature_184_residues
MNENFDLTYKALFRRYYPSLIFYATRLVGEEEAEDVVQDVFVELWKRKDSIEIGEQIQAFLYRAVYTRALNVLKHRNVED
GYCAAMEEINRRRAEFYQPDNNEVIRKIEDQELRKEIHDAINELPDKCKEVFKLSYLHDMKNKEIADVLGVSLRTVEAHM
YKALKFLRNRLGHLWFILLLFLLD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22055; Mature: 22055

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENFDLTYKALFRRYYPSLIFYATRLVGEEEAEDVVQDVFVELWKRKDSIEIGEQIQAF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LYRAVYTRALNVLKHRNVEDGYCAAMEEINRRRAEFYQPDNNEVIRKIEDQELRKEIHDA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
INELPDKCKEVFKLSYLHDMKNKEIADVLGVSLRTVEAHMYKALKFLRNRLGHLWFILLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLD
HHHC
>Mature Secondary Structure
MNENFDLTYKALFRRYYPSLIFYATRLVGEEEAEDVVQDVFVELWKRKDSIEIGEQIQAF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LYRAVYTRALNVLKHRNVEDGYCAAMEEINRRRAEFYQPDNNEVIRKIEDQELRKEIHDA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
INELPDKCKEVFKLSYLHDMKNKEIADVLGVSLRTVEAHMYKALKFLRNRLGHLWFILLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLD
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA