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The map label for this gene is xerD [C]

Identifier: 29346548

GI number: 29346548

Start: 1422161

End: 1423396

Strand: Reverse

Name: xerD [C]

Synonym: BT_1138

Alternate gene names: 29346548

Gene position: 1423396-1422161 (Counterclockwise)

Preceding gene: 29346549

Following gene: 29346545

Centisome position: 22.74

GC content: 56.23

Gene sequence:

>1236_bases
ATGAGCAGATCGACCTTCAAAATCCTCTTCTACGTGAAGAAGGGCAGCGAGAGAGCCAACGGCTATCTCCCCCTGATGTG
CCGTCTTACGGTAGACGGCGAAATCAAGCAGTTCAGCTGCAAGCTGGACGTGCCCCCGAAACTTTGGGACGTGAAAACGG
CACGTGCCACGGGCAAGAGCGCCGAGGCGCAGAAAATCAATGCGGCGGTTGACCGGATACGCGTGGACGTGAACCGCCGT
TACCAGGAACTGATGCAGTCCGACGGCTATGTCACCGCCGCCAGGCTGAGGGACGCCTGCCTCGGGCTGGGCGTGAAACG
CGAGACGCTGCTGAAGCTCTTCGAGCAGCACAACGAGGAGTTCATCAAGAAAGTGGGACACAGCCGCGTGCAGGGAACAT
ACAACCGCTACCGTACCATATACAGGCACCTTTGCGAGTTCGTCCCGAAAGTATACCGCCGTGACGACATCCCCCTGAAG
GAACTCAACCTGACCTTCATCAACAACTTCGAGTATTTCCTGCGTACGGAGAAGAAATGCCGCACCAATACCGTATGGGG
TTACATGATCGGGCTCAAGCACGTCATCTCCATCGCCCGCAACAGCGGTGCGCTTCCCTTCAACCCCTTCGCCGGGTACA
TCAATTCCCCCGAGAGCGTTGACCGAGGCTACCTGACGGAGCGTGAGATACAGACGTTGATGGAGACCCCGGTGAAAAGC
GGGACCTGCGAACTGGTACGCGACCTCTTCATCTTCTCTGTGTTCACCGGACTGGCATACGCGGACGTGAAGGCACTGAC
GACCGACCGGCTCCAGACCTTCTTCGACGGCAACCTCTGGATCATCACCCGCCGTCGCAAGACAAACACCGAGTCCAACA
TCCGCCTGCTGGACGTGCCCAAGCGCATCATAGAGAAGTATAAGGAACTGTCCAAGGACGGTCATGTATTTCCGGTACCG
AGCAACGGCAGATGCAACACCATATTGAAGGAACTTGGCAGGCAGTGCGGTTTCAAGATACGGCTGACCTATCATGTGGC
CCGGCATACGAACGCCACCACCGTGCTGCTCTCGCACGGTGTACCCATCGAGACCGTAAGCCGTCTTTTGGGGCATACGG
ATTTGAAAACCACCCAGATATATGCCCGGATAACCAACCAGAAGATCAGCAGCGACATGGAAATCCTGTCCCATAAGCTG
GAAAAGATGGAGAAGGAAATATGCGATGCCATCTGA

Upstream 100 bases:

>100_bases
CACAACAGATTCTATTTCAGTAATTTGCACAGTTTTTCATACCTGAGGACAACTCGCTTGATATTAACTTTGTAACGATC
AAAAAAGTATGAAAACGAGT

Downstream 100 bases:

>100_bases
GGAAATGGTATTTATGAAACGGATGATTTTCCCCTTCCTCATCAAAGTTCGTCCGTCCCTGCGGGACTCCGCGTTTTCCC
TTCGGTTTCCGGCAGAAAAT

Product: transposase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Site-Specific Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Integrase Protein; Mobilizable Transposon Int Protein; Integrase/Site-Specific Recombinase; Prophage; Integrase/Transposase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVDVNRR
YQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLK
ELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKS
GTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKELSKDGHVFPVP
SNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKL
EKMEKEICDAI

Sequences:

>Translated_411_residues
MSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVDVNRR
YQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLK
ELNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKS
GTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKELSKDGHVFPVP
SNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKL
EKMEKEICDAI
>Mature_410_residues
SRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKSAEAQKINAAVDRIRVDVNRRY
QELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEEFIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKE
LNLTFINNFEYFLRTEKKCRTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKSG
TCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVPKRIIEKYKELSKDGHVFPVPS
NGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKLE
KMEKEICDAI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47391; Mature: 47259

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKS
CCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHCCCHHHCCCCC
AEAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKC
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCHHHHHHCCHHH
RTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCC
GTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHH
KRIIEKYKELSKDGHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHG
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEECC
VPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKLEKMEKEICDAI
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRSTFKILFYVKKGSERANGYLPLMCRLTVDGEIKQFSCKLDVPPKLWDVKTARATGKS
CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCHHCCCHHHCCCCC
AEAQKINAAVDRIRVDVNRRYQELMQSDGYVTAARLRDACLGLGVKRETLLKLFEQHNEE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FIKKVGHSRVQGTYNRYRTIYRHLCEFVPKVYRRDDIPLKELNLTFINNFEYFLRTEKKC
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCHHHHHHCCHHH
RTNTVWGYMIGLKHVISIARNSGALPFNPFAGYINSPESVDRGYLTEREIQTLMETPVKS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCC
GTCELVRDLFIFSVFTGLAYADVKALTTDRLQTFFDGNLWIITRRRKTNTESNIRLLDVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHH
KRIIEKYKELSKDGHVFPVPSNGRCNTILKELGRQCGFKIRLTYHVARHTNATTVLLSHG
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEECC
VPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHKLEKMEKEICDAI
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA