Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346545
Identifier: 29346545
GI number: 29346545
Start: 1420882
End: 1421481
Strand: Reverse
Name: 29346545
Synonym: BT_1135
Alternate gene names: NA
Gene position: 1421481-1420882 (Counterclockwise)
Preceding gene: 29346548
Following gene: 29346544
Centisome position: 22.71
GC content: 42.0
Gene sequence:
>600_bases ATGGACGGTATTTCTTTATATGATGATTGTGTCATGCTTGCCTATAACAAGGAAGTACGGAGGAATTGCCTTCCTTTCAC TTGTGGCGAGAATGACCTTGATGATTTTTTTCTCAATGATGCCGATCTGTATGCGGATGAACTCCTTGGGAAAACATATT GTTGGGTGACGACTGAAATCCCGCATCGTATTGTGGCCTTGTTTACCTTGTCCAATGACAGTATCAAGACCAGATTAATA TCCCCCAATGATAAAAACAGGCTGCAACGCAATATTGTAAATCCTAAACGTGGACGCAGCTATCCGGCCGTGCTGATAGG AAGACTGGGGGTCAATCTGGAATATCAGGGTACATCAAGCCACGTAGGACGGCAACTGATGGCTTTCATAAAAGACTGGT TCCGTCATGAGGACAACAAGACAGGATGCCGTTTTATCGTGGTGGATGCATACAATGAGGAAAAGATTCTCAGGTATTAT GAAAGAAACGGTTTCGTTCCACTCTATAAAACAGACGTGATAGAAAAGCAATATTATGATATTCCGCAAGATGAACCTTT GAAAACCCGTTTGCTGTATTTTGATTTGAAAAAGGACTGA
Upstream 100 bases:
>100_bases AGAACGCCGCAAAGGTAACACCCCGGTTATCAGTGGAGGCAAAGAAACGGTTGCGAAAAGTATTGGAGAAATCCCGTTCA TTCCGGTTCAATTAACAGCA
Downstream 100 bases:
>100_bases CATAATAATATATCAGTAAAATCCTTTAGGGTGACAACGGGTTCCAAAGACAGGCTGTCGCTACGATTACCTGCCATATG GCACCGGCCGTTTTCTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MDGISLYDDCVMLAYNKEVRRNCLPFTCGENDLDDFFLNDADLYADELLGKTYCWVTTEIPHRIVALFTLSNDSIKTRLI SPNDKNRLQRNIVNPKRGRSYPAVLIGRLGVNLEYQGTSSHVGRQLMAFIKDWFRHEDNKTGCRFIVVDAYNEEKILRYY ERNGFVPLYKTDVIEKQYYDIPQDEPLKTRLLYFDLKKD
Sequences:
>Translated_199_residues MDGISLYDDCVMLAYNKEVRRNCLPFTCGENDLDDFFLNDADLYADELLGKTYCWVTTEIPHRIVALFTLSNDSIKTRLI SPNDKNRLQRNIVNPKRGRSYPAVLIGRLGVNLEYQGTSSHVGRQLMAFIKDWFRHEDNKTGCRFIVVDAYNEEKILRYY ERNGFVPLYKTDVIEKQYYDIPQDEPLKTRLLYFDLKKD >Mature_199_residues MDGISLYDDCVMLAYNKEVRRNCLPFTCGENDLDDFFLNDADLYADELLGKTYCWVTTEIPHRIVALFTLSNDSIKTRLI SPNDKNRLQRNIVNPKRGRSYPAVLIGRLGVNLEYQGTSSHVGRQLMAFIKDWFRHEDNKTGCRFIVVDAYNEEKILRYY ERNGFVPLYKTDVIEKQYYDIPQDEPLKTRLLYFDLKKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23400; Mature: 23400
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGISLYDDCVMLAYNKEVRRNCLPFTCGENDLDDFFLNDADLYADELLGKTYCWVTTEI CCCCCHHCCEEEEEECHHHHHCCCCEECCCCCCHHHHCCCHHHHHHHHCCCEEEEEEECC PHRIVALFTLSNDSIKTRLISPNDKNRLQRNIVNPKRGRSYPAVLIGRLGVNLEYQGTSS CCEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCHH HVGRQLMAFIKDWFRHEDNKTGCRFIVVDAYNEEKILRYYERNGFVPLYKTDVIEKQYYD HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHCC IPQDEPLKTRLLYFDLKKD CCCCCCCEEEEEEEEECCC >Mature Secondary Structure MDGISLYDDCVMLAYNKEVRRNCLPFTCGENDLDDFFLNDADLYADELLGKTYCWVTTEI CCCCCHHCCEEEEEECHHHHHCCCCEECCCCCCHHHHCCCHHHHHHHHCCCEEEEEEECC PHRIVALFTLSNDSIKTRLISPNDKNRLQRNIVNPKRGRSYPAVLIGRLGVNLEYQGTSS CCEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCHH HVGRQLMAFIKDWFRHEDNKTGCRFIVVDAYNEEKILRYYERNGFVPLYKTDVIEKQYYD HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHCC IPQDEPLKTRLLYFDLKKD CCCCCCCEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA