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The map label for this gene is ykgB [H]

Identifier: 29346532

GI number: 29346532

Start: 1411094

End: 1412248

Strand: Reverse

Name: ykgB [H]

Synonym: BT_1122

Alternate gene names: 29346532

Gene position: 1412248-1411094 (Counterclockwise)

Preceding gene: 29346534

Following gene: 29346531

Centisome position: 22.56

GC content: 42.34

Gene sequence:

>1155_bases
ATGAAACCAAAAGCTTTATTTGTCATGTTAATCTTATGGCTTAGCTTCACTACGATTCAAGCGCGGTCAACCGAAGATGT
CCCGGATAAGGGAACTTATGCAAAATTTCTGTTGGTAGGATGTTATATGAAGCCAGACGAAGAAGGTGTCAGAATGTACC
GGTTTGACGGACAAACTGCCGATGTCGACTATCCGTGTGGGCTGAGAGGGATTTCAAATCCTGCTTTCCTTACATCTGAT
AGCACTGGTAATCGAATTTATGCCATAGGCGATGATGAAGGGAAAAGTTCGACTGCCAATGCTTTGCTTTTTGATAAGGA
AAGTGGTCTGCTGTCTCTGCTTAACTCGCAATCTACAGACGGTGAACTTCCTATTTATATTACTCTCAGTCCAAAGGAAT
ACTTTGTTCTGACAGCAAATTATAAGGGTGGCAGCATCACGGTATTCTCACAGGATAAGAAAGGAAAGTTGCAACGTGAT
ACAAAAATAATTCGTTTTGCTGGAAATGGGCCGAATAAAAAAAGGCAGGAACAATCGCATCTGCATTGCGTGACCTTTAC
ACCTGATGGCAAATTCCTTCTTGCTACCGATTTGGGAACAGATTGTATCTATCTGTTTCCGATAGGCAAACGACCGGAAG
CAGGTAAGGCTCATTCTCTGTTGGATGAATCAAGAGTAGTCCGCATACAGATGGATTCCGGCTCAGGACCTCGACATATA
TGTTTTCACCCGAATGGCAGATTTGCTTATCTCATCAGTGAACTCTCGGGTAAAATAACTGTATTCTCCTATAATGAAGG
CAAGTTGGAACGTTTACAAACAATTGTCTGCGACCCTTTCGTTGCAGAGGGAAATGCAGATATCCATGTTTCATCCGATG
GCAAATTCCTCTATGCTTCCAAGCACTTGAAAGAAGATGGCATAATTGTTTATTCCATTGATTCCCAAAAAGGAACATTG
GTTCAAATAGGATTTCAGCCAACAGGTCTTTATCCGCGAAGTTTTGCCATCTCTCCGGATGGTTGCTATTTGGCAGTGGT
TTGCAGGGATGCCAACTGCATACAGATATTCGAAAGAAACCGAAATACGGGGTTACTGAAGAATACGGGAAAAAATATCC
GACTGGAAAGACCGGCGTTTGTCAAGTTCTTATAA

Upstream 100 bases:

>100_bases
TCCAAGCCCGATGAAAGTGGTAATTTTATCAGTGATTGAGGTCTAATCTTCAGTATGTGAATGCTGTAATTTTGCAAGTG
AAACCAAAAAGGTAAATAAG

Downstream 100 bases:

>100_bases
ATTCATCACTAAACAGAAAGCAATATGAACAAGTTAATTACAACCATCGCCTGCCTGATATGCTGTATCGTTTATACGCA
GGCACAAAACAAGAACAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKPKALFVMLILWLSFTTIQARSTEDVPDKGTYAKFLLVGCYMKPDEEGVRMYRFDGQTADVDYPCGLRGISNPAFLTSD
STGNRIYAIGDDEGKSSTANALLFDKESGLLSLLNSQSTDGELPIYITLSPKEYFVLTANYKGGSITVFSQDKKGKLQRD
TKIIRFAGNGPNKKRQEQSHLHCVTFTPDGKFLLATDLGTDCIYLFPIGKRPEAGKAHSLLDESRVVRIQMDSGSGPRHI
CFHPNGRFAYLISELSGKITVFSYNEGKLERLQTIVCDPFVAEGNADIHVSSDGKFLYASKHLKEDGIIVYSIDSQKGTL
VQIGFQPTGLYPRSFAISPDGCYLAVVCRDANCIQIFERNRNTGLLKNTGKNIRLERPAFVKFL

Sequences:

>Translated_384_residues
MKPKALFVMLILWLSFTTIQARSTEDVPDKGTYAKFLLVGCYMKPDEEGVRMYRFDGQTADVDYPCGLRGISNPAFLTSD
STGNRIYAIGDDEGKSSTANALLFDKESGLLSLLNSQSTDGELPIYITLSPKEYFVLTANYKGGSITVFSQDKKGKLQRD
TKIIRFAGNGPNKKRQEQSHLHCVTFTPDGKFLLATDLGTDCIYLFPIGKRPEAGKAHSLLDESRVVRIQMDSGSGPRHI
CFHPNGRFAYLISELSGKITVFSYNEGKLERLQTIVCDPFVAEGNADIHVSSDGKFLYASKHLKEDGIIVYSIDSQKGTL
VQIGFQPTGLYPRSFAISPDGCYLAVVCRDANCIQIFERNRNTGLLKNTGKNIRLERPAFVKFL
>Mature_384_residues
MKPKALFVMLILWLSFTTIQARSTEDVPDKGTYAKFLLVGCYMKPDEEGVRMYRFDGQTADVDYPCGLRGISNPAFLTSD
STGNRIYAIGDDEGKSSTANALLFDKESGLLSLLNSQSTDGELPIYITLSPKEYFVLTANYKGGSITVFSQDKKGKLQRD
TKIIRFAGNGPNKKRQEQSHLHCVTFTPDGKFLLATDLGTDCIYLFPIGKRPEAGKAHSLLDESRVVRIQMDSGSGPRHI
CFHPNGRFAYLISELSGKITVFSYNEGKLERLQTIVCDPFVAEGNADIHVSSDGKFLYASKHLKEDGIIVYSIDSQKGTL
VQIGFQPTGLYPRSFAISPDGCYLAVVCRDANCIQIFERNRNTGLLKNTGKNIRLERPAFVKFL

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=301, Percent_Identity=27.2425249169435, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 42625; Mature: 42625

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKALFVMLILWLSFTTIQARSTEDVPDKGTYAKFLLVGCYMKPDEEGVRMYRFDGQTA
CCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCC
DVDYPCGLRGISNPAFLTSDSTGNRIYAIGDDEGKSSTANALLFDKESGLLSLLNSQSTD
CCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCC
GELPIYITLSPKEYFVLTANYKGGSITVFSQDKKGKLQRDTKIIRFAGNGPNKKRQEQSH
CCEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC
LHCVTFTPDGKFLLATDLGTDCIYLFPIGKRPEAGKAHSLLDESRVVRIQMDSGSGPRHI
EEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEECCCCCCCEE
CFHPNGRFAYLISELSGKITVFSYNEGKLERLQTIVCDPFVAEGNADIHVSSDGKFLYAS
EECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCEEECCCCEEEECCCCCEEEEE
KHLKEDGIIVYSIDSQKGTLVQIGFQPTGLYPRSFAISPDGCYLAVVCRDANCIQIFERN
CCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECC
RNTGLLKNTGKNIRLERPAFVKFL
CCCCEEECCCCCEEEECCEEEEEC
>Mature Secondary Structure
MKPKALFVMLILWLSFTTIQARSTEDVPDKGTYAKFLLVGCYMKPDEEGVRMYRFDGQTA
CCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEECCCCC
DVDYPCGLRGISNPAFLTSDSTGNRIYAIGDDEGKSSTANALLFDKESGLLSLLNSQSTD
CCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCC
GELPIYITLSPKEYFVLTANYKGGSITVFSQDKKGKLQRDTKIIRFAGNGPNKKRQEQSH
CCEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC
LHCVTFTPDGKFLLATDLGTDCIYLFPIGKRPEAGKAHSLLDESRVVRIQMDSGSGPRHI
EEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHCCCCEEEEEEECCCCCCCEE
CFHPNGRFAYLISELSGKITVFSYNEGKLERLQTIVCDPFVAEGNADIHVSSDGKFLYAS
EECCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCEEECCCCEEEECCCCCEEEEE
KHLKEDGIIVYSIDSQKGTLVQIGFQPTGLYPRSFAISPDGCYLAVVCRDANCIQIFERN
CCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECC
RNTGLLKNTGKNIRLERPAFVKFL
CCCCEEECCCCCEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]