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The map label for this gene is (hspc4-1 [H]

Identifier: 29346514

GI number: 29346514

Start: 1393103

End: 1393531

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: BT_1104

Alternate gene names: 29346514

Gene position: 1393531-1393103 (Counterclockwise)

Preceding gene: 29346515

Following gene: 29346513

Centisome position: 22.26

GC content: 41.03

Gene sequence:

>429_bases
ATGGTACCTGTAAAAACAAACCAGAATTGGTTACCGAGTATTTTTAACGATTTCTTTGACAATGAATGGATGGCAAGAGC
AAACGCTACGGCTCCAGCCATCAATGTGATTGAGAATGAAAAGGACTACAAGGTAGAACTGGCAGCTCCAGGAATGACCA
AGAATGATTTTAAGGTAAGTGTGGATGAAAGCAACAATCTGGTAATCTGCATGGAAAAAAAGGACGAGAAAAAGGAGGAG
AAGAAAGACGGAAAATACTTGCGCCGTGAATTCTCCTATTCCCGATTCCAGCAGAGTATCCTGCTGCCGGATAATGTGGA
AAAAGATAAAATTTCGGCCAAAGTGGAACACGGGGTCCTGTTTATCGATATTCCCAAAGTCGTAGATAAGAAGGTTCAGG
AAACCACCAAAACTATTGATGTCAAATAA

Upstream 100 bases:

>100_bases
GCTGTGGCCAAACAAGGGATGGCTAAAAAATAAAAATCTGTCTATCAAGCAGATGCTTTTTTTTAAGTTTTAATTATTAA
CTTTTAAAGAGGAGGTAAAA

Downstream 100 bases:

>100_bases
GATATCTTGATGAGACTCTACAGAAGGCATTTCTTATTATCAGGGAATGCCTTCACCCGGATATTTGAATTCCAAAATAA
ATATAATGAGAGGATTTGAT

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MVPVKTNQNWLPSIFNDFFDNEWMARANATAPAINVIENEKDYKVELAAPGMTKNDFKVSVDESNNLVICMEKKDEKKEE
KKDGKYLRREFSYSRFQQSILLPDNVEKDKISAKVEHGVLFIDIPKVVDKKVQETTKTIDVK

Sequences:

>Translated_142_residues
MVPVKTNQNWLPSIFNDFFDNEWMARANATAPAINVIENEKDYKVELAAPGMTKNDFKVSVDESNNLVICMEKKDEKKEE
KKDGKYLRREFSYSRFQQSILLPDNVEKDKISAKVEHGVLFIDIPKVVDKKVQETTKTIDVK
>Mature_142_residues
MVPVKTNQNWLPSIFNDFFDNEWMARANATAPAINVIENEKDYKVELAAPGMTKNDFKVSVDESNNLVICMEKKDEKKEE
KKDGKYLRREFSYSRFQQSILLPDNVEKDKISAKVEHGVLFIDIPKVVDKKVQETTKTIDVK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16428; Mature: 16428

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVKTNQNWLPSIFNDFFDNEWMARANATAPAINVIENEKDYKVELAAPGMTKNDFKVS
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEE
VDESNNLVICMEKKDEKKEEKKDGKYLRREFSYSRFQQSILLPDNVEKDKISAKVEHGVL
EECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHEEECCCEE
FIDIPKVVDKKVQETTKTIDVK
EEECHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVPVKTNQNWLPSIFNDFFDNEWMARANATAPAINVIENEKDYKVELAAPGMTKNDFKVS
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEE
VDESNNLVICMEKKDEKKEEKKDGKYLRREFSYSRFQQSILLPDNVEKDKISAKVEHGVL
EECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHEEECCCEE
FIDIPKVVDKKVQETTKTIDVK
EEECHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA