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The map label for this gene is 29346513

Identifier: 29346513

GI number: 29346513

Start: 1392562

End: 1393056

Strand: Reverse

Name: 29346513

Synonym: BT_1103

Alternate gene names: NA

Gene position: 1393056-1392562 (Counterclockwise)

Preceding gene: 29346514

Following gene: 29346512

Centisome position: 22.25

GC content: 37.98

Gene sequence:

>495_bases
ATGCCTTCACCCGGATATTTGAATTCCAAAATAAATATAATGAGAGGATTTGATTTCGATAAAGCGCTGGTAGCCCTTCA
GAATGAACTGCATTGTTTTGCATATAAACTGACTGCTGACAAGGATGAAGCAGAAAACTTGTTGCAGGAAACAATGTTGA
GGACGTTGGATAATAAGGATAAGTTTGATTCCGGTACGAATTTTAAAGGCTGGATGTATACCATCATGCGCAATGCATTT
ATCAATAATTGCCGGACAAAGAAAATACGAGGGAATTTATATGTATTATCAGAACCTGAATATCATTTCCTGTTAAGGGA
CGACTCTTTCATTTTCGTGGATAACGGGCATGATGCAAAAGAGATAAGGGAAGCCCTTAAAACATTGCCTAAAGCGCATT
ATGTCGTTTTTATGTTGTACCGGAGTCAAATATCGGGAAATAGCCGCAAAGATAGGAGTGTCACTGAGTACGATAAAAAG
CCGTATCTTTTATAG

Upstream 100 bases:

>100_bases
AAAGTCGTAGATAAGAAGGTTCAGGAAACCACCAAAACTATTGATGTCAAATAAGATATCTTGATGAGACTCTACAGAAG
GCATTTCTTATTATCAGGGA

Downstream 100 bases:

>100_bases
CAGAAAAAGGCTAAAACAGTTGCTTTCTAATTTTGCCTGATTAATTAAAATATAAAAAACAAATTATGGATAACAAGTAT
ATTGGAATTCTGACTTCCGG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-; Extracytoplasmic Function AlteRNAtive Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF-Family Sigma Factor H

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MPSPGYLNSKINIMRGFDFDKALVALQNELHCFAYKLTADKDEAENLLQETMLRTLDNKDKFDSGTNFKGWMYTIMRNAF
INNCRTKKIRGNLYVLSEPEYHFLLRDDSFIFVDNGHDAKEIREALKTLPKAHYVVFMLYRSQISGNSRKDRSVTEYDKK
PYLL

Sequences:

>Translated_164_residues
MPSPGYLNSKINIMRGFDFDKALVALQNELHCFAYKLTADKDEAENLLQETMLRTLDNKDKFDSGTNFKGWMYTIMRNAF
INNCRTKKIRGNLYVLSEPEYHFLLRDDSFIFVDNGHDAKEIREALKTLPKAHYVVFMLYRSQISGNSRKDRSVTEYDKK
PYLL
>Mature_163_residues
PSPGYLNSKINIMRGFDFDKALVALQNELHCFAYKLTADKDEAENLLQETMLRTLDNKDKFDSGTNFKGWMYTIMRNAFI
NNCRTKKIRGNLYVLSEPEYHFLLRDDSFIFVDNGHDAKEIREALKTLPKAHYVVFMLYRSQISGNSRKDRSVTEYDKKP
YLL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19237; Mature: 19106

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPGYLNSKINIMRGFDFDKALVALQNELHCFAYKLTADKDEAENLLQETMLRTLDNKD
CCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCC
KFDSGTNFKGWMYTIMRNAFINNCRTKKIRGNLYVLSEPEYHFLLRDDSFIFVDNGHDAK
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEECCCEEEEEECCCEEEEECCCCHH
EIREALKTLPKAHYVVFMLYRSQISGNSRKDRSVTEYDKKPYLL
HHHHHHHHCCHHHHHHHHEEHHHCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
PSPGYLNSKINIMRGFDFDKALVALQNELHCFAYKLTADKDEAENLLQETMLRTLDNKD
CCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCC
KFDSGTNFKGWMYTIMRNAFINNCRTKKIRGNLYVLSEPEYHFLLRDDSFIFVDNGHDAK
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEEECCCEEEEEECCCEEEEECCCCHH
EIREALKTLPKAHYVVFMLYRSQISGNSRKDRSVTEYDKKPYLL
HHHHHHHHCCHHHHHHHHEEHHHCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA