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The map label for this gene is ybdM [H]

Identifier: 29346479

GI number: 29346479

Start: 1356788

End: 1357330

Strand: Reverse

Name: ybdM [H]

Synonym: BT_1069

Alternate gene names: 29346479

Gene position: 1357330-1356788 (Counterclockwise)

Preceding gene: 29346480

Following gene: 29346478

Centisome position: 21.68

GC content: 45.12

Gene sequence:

>543_bases
ATGAGTGTAGATAAAAGTCCGGTCTACGAGGTGAAAGCAGTGCCCGTAGAAAAAGTATTAGCGAACGATTATAACCCGAA
TGTCGTAGCTCCTCCCGAAATGAAGTTACTGGAGCTTTCGATCTGGGAAGACGGTTTTACAATGCCTTGTGTATGTTATT
ACAATAAAGAGGAAGATAATTATATCCTCGTAGATGGTTATCACCGATATACGGTATTGAAGACATCGAAACGGATTTAT
AAGCGTGAGAACGGATTGCTTCCGATTGTGGTGATCGATAAGGATTTGTCCAATCGTATGAGCTCTACCATCCGGCACAA
CCGTGCCCGTGGGATGCATAATATTGAGCTGATGTGTAACATTGTAGCAGAATTGGACAGAGCCGGCATGTCCGACCAGT
GGATTATGAAAAATATCGGAATGGATCGGGATGAACTGCTGCGTTTGAAGCAGATTTCGGGACTGGCGGATTTGTTTGCC
AACCGGGAGTTCAGTATCCCGGATGAGGTGGCACCTACGGAGACAGAACGTAAAACACTCTGA

Upstream 100 bases:

>100_bases
TCAAGAATGACCATGCCTGCAAATACATGGGATTCTCGCCGACCAAAGAGGAGATGAGTAAGAGAAGTCAAGTTATGGAA
CAATATAGAATCATAGTATC

Downstream 100 bases:

>100_bases
TTTTTCACCTGTATCATAGTATATAACATAGCCCTCGGATGAGATTATCCGGGGGCTTGTTTTATTATGGAATTTATTTA
TATTAATTCACACTAAAAGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSVDKSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDNYILVDGYHRYTVLKTSKRIY
KRENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCNIVAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFA
NREFSIPDEVAPTETERKTL

Sequences:

>Translated_180_residues
MSVDKSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDNYILVDGYHRYTVLKTSKRIY
KRENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCNIVAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFA
NREFSIPDEVAPTETERKTL
>Mature_179_residues
SVDKSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDNYILVDGYHRYTVLKTSKRIYK
RENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCNIVAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFAN
REFSIPDEVAPTETERKTL

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=159, Percent_Identity=47.7987421383648, Blast_Score=146, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 20770; Mature: 20639

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDKSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDN
CCCCCCCCEEEECCCHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCEEEEECCCCCC
YILVDGYHRYTVLKTSKRIYKRENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCN
EEEEECCEEEEEEEHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHH
IVAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFANREFSIPDEVAPTETERKTL
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVDKSPVYEVKAVPVEKVLANDYNPNVVAPPEMKLLELSIWEDGFTMPCVCYYNKEEDN
CCCCCCCEEEECCCHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCEEEEECCCCCC
YILVDGYHRYTVLKTSKRIYKRENGLLPIVVIDKDLSNRMSSTIRHNRARGMHNIELMCN
EEEEECCEEEEEEEHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHH
IVAELDRAGMSDQWIMKNIGMDRDELLRLKQISGLADLFANREFSIPDEVAPTETERKTL
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]