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The map label for this gene is cybC

Identifier: 29144718

GI number: 29144718

Start: 4622243

End: 4622629

Strand: Direct

Name: cybC

Synonym: t4473

Alternate gene names: 29144718

Gene position: 4622243-4622629 (Clockwise)

Preceding gene: 29144717

Following gene: 29144719

Centisome position: 96.46

GC content: 48.06

Gene sequence:

>387_bases
ATGCGTAAAAGCCTGTTAGCTATTCTTGCTGTGTCATCGCTGGTATTCGGTTCGGCTGTTTTTGCTGCCGATCTTGAAGA
TAATATGGATATTCTCAATGATAACCTGAAAGTTGTTGAGAAAACGGATAGTGCCCCTGAGCTGAAAGCGGCATTAACTA
AAATGCGCGCGGCCGCGCTGGATGCTCAAAAAGCTACGCCGCCAAAGCTGGAAGATAAAGCGCCGGATAGCCCGGAAATG
AAGGATTTTCGTCACGGTTTTGACATTCTGGTCGGCCAAATTGATGGCGCGCTGAAGCTGGCGAACGAAGGTAACGTTAA
AGAAGCGAAAGCGGCGGCGGAAGCGCTAAAAACCACCCGCAATACGTATCATAAGAAGTATCGTTAA

Upstream 100 bases:

>100_bases
TAATACCCGTCATACTTCAGGCTGCAGGCGCGTTGGCTGCCTGCAACTCGAATTATTCAGGGTATTACACTTATCGTTAA
TAATAAAAAGGAAGTGAGCA

Downstream 100 bases:

>100_bases
TTTTTGTGGGATGGCGGCTTCGCTTTATCCGCAGGTCGCCATCCGGCAAAATGTAATACCCATCACACTTTCTCACTTTA
TACGACAACGTCATTGTTTC

Product: soluble cytochrome b562

Products: reduced cytochrome b [C]

Alternate protein names: Cytochrome b-562

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEM
KDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR

Sequences:

>Translated_128_residues
MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEM
KDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR
>Mature_128_residues
MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEM
KDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR

Specific function: Electron-transport protein of unknown function

COG id: COG3783

COG function: function code C; Soluble cytochrome b562

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b562 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): C562_SALTI (P63728)

Other databases:

- EMBL:   AL627283
- EMBL:   AE014613
- RefSeq:   NP_458856.1
- RefSeq:   NP_808060.1
- ProteinModelPortal:   P63728
- SMR:   P63728
- PRIDE:   P63728
- GeneID:   1070449
- GeneID:   1250980
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t4473
- KEGG:   sty:STY4778
- HOGENOM:   HBG416794
- OMA:   DFRHGLD
- ProtClustDB:   PRK15058
- BioCyc:   SENT209261:T4473-MONOMER
- BioCyc:   SENT220341:STY4778-MONOMER
- GO:   GO:0006810
- InterPro:   IPR009155
- InterPro:   IPR010980
- Gene3D:   G3DSA:1.20.120.10
- PIRSF:   PIRSF000029

Pfam domain/function: PF07361 Cytochrom_B562; SSF47175 Cyt_c_b562

EC number: NA

Molecular weight: Translated: 13912; Mature: 13912

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAAL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
DAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
NTYHKKYR
HHHHHCCC
>Mature Secondary Structure
MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAAL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
DAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
NTYHKKYR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: cytochrome b oxidized; Electron [C]

Specific reaction: cytochrome b oxidized + 2 Electron = reduced cytochrome b [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504