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The map label for this gene is ybdN [H]

Identifier: 29144533

GI number: 29144533

Start: 4442986

End: 4444233

Strand: Direct

Name: ybdN [H]

Synonym: t4277

Alternate gene names: 29144533

Gene position: 4442986-4444233 (Clockwise)

Preceding gene: 29144532

Following gene: 29144534

Centisome position: 92.72

GC content: 51.28

Gene sequence:

>1248_bases
ATGTCAGATAACGTCATTATGCAACGTAATCAAATACAGAAGATCAGAACCGGGGAGGATGTGCTGTCTGCGGTTACAGG
CCGTGTGGAGTGGATATTTGATACCTTTTCTCAGGTTTGTCTGTCTTTTTCAGGTGGAAAAGACTCCACCGTTCTGTTTC
ATATCGCCGCCACAATAGCCCGCAGGAAACACCGGCGTTTCTCTGTCCTTTTTATTGACTGGGAAGCCCAGTATCAGTGC
ACGATTGAGCATGTTCAGAAAATGAAGGATCTCTACAGTGATGTGACGGAGACGTTTTTCTGGGTGGCTCTCCCGCTGAC
GACGGTAAATGGTGTTTCACAGTTTCAGCCAGAATGGGTCTGCTGGGAGCCCGATGTGGAGTGGGTGCGTCAGCCGCCGA
CAGATGCCATTACTGATACGACGTATTTTCCTTTTTACCGTTACGCCATGACATTTGAAGAGTTTGTCCCGGCATTTTCG
ACTTGGTTCACGGGCAATCAGTGTGGAGTGGCCATACTGACTGGCGTTCGTGCAGATGAGTCCCTTAACAGGTTTATAGG
CCTTACCAGCCAGCGAAAGCTTCGTTATGCCGATGACAAACCCTGGACCACCGCCTCTCCTGAGGGGTTTTATTACACGA
TGTGTCCTCTGTATGACTGGAAAGCCCGGGACATCTGGATTTACCATGCCCGTACGGGCGCCATTTACAACCCGCTGTAT
GACCTGATGTACAGAGCCGGCGTCCCCCTGCGGAATATGCGGGTCTGTGAACCTTTTGGCCCCGAACAGCGCCGCGGTCT
GTGGCTTTATCATGTACTGGAGCCTGAGACCTGGGCGCGAATGTGTGCCCGCGTCTCCGGAGCGGCCAGCGGGGCCATTT
ATGCTAATGAAAGTGGCGCTTATTTTGCCCTGCGCAAACGCATCTCCAGACCAGCACATCATACCTGGCGCAGCTATGCC
ATGTTTCTTCTTGATGTCATGCCACAAAAAACAGCCGAGCATTACCGGAACAAGATAGCGGTATACCTGCGCTGGTATCA
GACGCACGGTTATCCGGAAGATATTCCGGATGAACAGGAGAATGACCTGGGCAGCAGGGATATTCCCTCCTGGCGTAGGA
TATGCAAGACACTGATTAAAAATGACTTCTGGTGCCGGACCTTATCTTTCAGTCCTAATAAGCCCCGGCATTACGAACGT
TACCTGGAGCGTATGAAACAAAGGAGGAAGGAATGGGGGATATTGTAA

Upstream 100 bases:

>100_bases
TTAAGAAAGCACATTTTAATATTGTCATTTCACTAACAACTGAACTAATGCTTAGCAGGGTAATTATTCAACATAGCAGG
GAGATGGTTTTCAGACACTC

Downstream 100 bases:

>100_bases
CCAGGGAACAGGTGGCCAGTCTCATTACCCGGTATTTCAGTCAGCAGCTTTCAGATGACGAAAAAGTGGCAGCCCTCAAT
CATTTTCGCCTGACACTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFSGGKDSTVLFHIAATIARRKHRRFSVLFIDWEAQYQC
TIEHVQKMKDLYSDVTETFFWVALPLTTVNGVSQFQPEWVCWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFS
TWFTGNQCGVAILTGVRADESLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLYDWKARDIWIYHARTGAIYNPLY
DLMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPETWARMCARVSGAASGAIYANESGAYFALRKRISRPAHHTWRSYA
MFLLDVMPQKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQENDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYER
YLERMKQRRKEWGIL

Sequences:

>Translated_415_residues
MSDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFSGGKDSTVLFHIAATIARRKHRRFSVLFIDWEAQYQC
TIEHVQKMKDLYSDVTETFFWVALPLTTVNGVSQFQPEWVCWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFS
TWFTGNQCGVAILTGVRADESLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLYDWKARDIWIYHARTGAIYNPLY
DLMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPETWARMCARVSGAASGAIYANESGAYFALRKRISRPAHHTWRSYA
MFLLDVMPQKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQENDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYER
YLERMKQRRKEWGIL
>Mature_414_residues
SDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFSGGKDSTVLFHIAATIARRKHRRFSVLFIDWEAQYQCT
IEHVQKMKDLYSDVTETFFWVALPLTTVNGVSQFQPEWVCWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFST
WFTGNQCGVAILTGVRADESLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLYDWKARDIWIYHARTGAIYNPLYD
LMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPETWARMCARVSGAASGAIYANESGAYFALRKRISRPAHHTWRSYAM
FLLDVMPQKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQENDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERY
LERMKQRRKEWGIL

Specific function: Unknown

COG id: COG3969

COG function: function code R; Predicted phosphoadenosine phosphosulfate sulfotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786818, Length=404, Percent_Identity=57.9207920792079, Blast_Score=516, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021845
- InterPro:   IPR002500
- InterPro:   IPR014729 [H]

Pfam domain/function: PF11922 DUF3440; PF01507 PAPS_reduct [H]

EC number: NA

Molecular weight: Translated: 49036; Mature: 48905

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFSGGKDSTVLFHIAATIA
CCCCEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
RRKHRRFSVLFIDWEAQYQCTIEHVQKMKDLYSDVTETFFWVALPLTTVNGVSQFQPEWV
HHHCCEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEE
CWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFSTWFTGNQCGVAILTGVRADE
EECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
SLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLYDWKARDIWIYHARTGAIYNPLY
HHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCCEECCCCEEEEEEECCCCHHHHHH
DLMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPETWARMCARVSGAASGAIYANESGA
HHHHHCCCCCCCCEECCCCCCHHHCCEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCCC
YFALRKRISRPAHHTWRSYAMFLLDVMPQKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQE
HHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCC
NDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLERMKQRRKEWGIL
CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFSGGKDSTVLFHIAATIA
CCCEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
RRKHRRFSVLFIDWEAQYQCTIEHVQKMKDLYSDVTETFFWVALPLTTVNGVSQFQPEWV
HHHCCEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEE
CWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFSTWFTGNQCGVAILTGVRADE
EECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
SLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLYDWKARDIWIYHARTGAIYNPLY
HHHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEECCCEECCCCEEEEEEECCCCHHHHHH
DLMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPETWARMCARVSGAASGAIYANESGA
HHHHHCCCCCCCCEECCCCCCHHHCCEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCCC
YFALRKRISRPAHHTWRSYAMFLLDVMPQKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQE
HHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCC
NDLGSRDIPSWRRICKTLIKNDFWCRTLSFSPNKPRHYERYLERMKQRRKEWGIL
CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]