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The map label for this gene is ybdM [H]

Identifier: 29144534

GI number: 29144534

Start: 4444245

End: 4444859

Strand: Direct

Name: ybdM [H]

Synonym: t4278

Alternate gene names: 29144534

Gene position: 4444245-4444859 (Clockwise)

Preceding gene: 29144533

Following gene: 29144536

Centisome position: 92.74

GC content: 53.82

Gene sequence:

>615_bases
GTGGCCAGTCTCATTACCCGGTATTTCAGTCAGCAGCTTTCAGATGACGAAAAAGTGGCAGCCCTCAATCATTTTCGCCT
GACACTTCATGAGCTCAGCCCCTTTGCCCGGGAGCCTGTGGACCTGGTGCTGTGGGTGAAAGCCAGCGAAGTGGTGGCCA
ACGATTACAACCCCAATGTTATGGCTGCCGGAGAGAAAAAATTGCTGCAGCACTCACTGCAGGAGGACGGCTTTACCCAG
CCCGTCGTTGTATCTGAAGAGAAAGGGCAGTACCTGGTCGTGGATGGTTTTCACCGGCAGTTGCTGGGCAGACGCGAGTC
AGGAGCAGGAAAACGCCTGAAAGGCTGGTTGCCCGTCACCTGTATCAATCCCGAACGAAAGGGGAAGGCTGAACGAATTG
CCTCGACGATCAGGCATAACCGCGCCCGAGGGAAGCATCAGATAGCGTCGATGTCAGATATTGTCAGAGACCTTGCCCGT
CTCGGATGGGCAGATGAACGTATTGGCAAGGAGCTGGGAATGGACAGGGATGAAGTTCTTCGTCTGAAGCAGATAAGTGG
ACTGACAGAATTATTTGAAGAAGAGGACTTCAGTCCGGCCTGGACGGTTCGCTAA

Upstream 100 bases:

>100_bases
CCTTATCTTTCAGTCCTAATAAGCCCCGGCATTACGAACGTTACCTGGAGCGTATGAAACAAAGGAGGAAGGAATGGGGG
ATATTGTAACCAGGGAACAG

Downstream 100 bases:

>100_bases
AGTGGACAGCATCTTATCGCAAATAAAACTATTTCGGCCGGTGACCTGAATTATTATTTAATGATTACCAATAAAGATTT
CCGTATAAGAACAGGGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MASLITRYFSQQLSDDEKVAALNHFRLTLHELSPFAREPVDLVLWVKASEVVANDYNPNVMAAGEKKLLQHSLQEDGFTQ
PVVVSEEKGQYLVVDGFHRQLLGRRESGAGKRLKGWLPVTCINPERKGKAERIASTIRHNRARGKHQIASMSDIVRDLAR
LGWADERIGKELGMDRDEVLRLKQISGLTELFEEEDFSPAWTVR

Sequences:

>Translated_204_residues
MASLITRYFSQQLSDDEKVAALNHFRLTLHELSPFAREPVDLVLWVKASEVVANDYNPNVMAAGEKKLLQHSLQEDGFTQ
PVVVSEEKGQYLVVDGFHRQLLGRRESGAGKRLKGWLPVTCINPERKGKAERIASTIRHNRARGKHQIASMSDIVRDLAR
LGWADERIGKELGMDRDEVLRLKQISGLTELFEEEDFSPAWTVR
>Mature_203_residues
ASLITRYFSQQLSDDEKVAALNHFRLTLHELSPFAREPVDLVLWVKASEVVANDYNPNVMAAGEKKLLQHSLQEDGFTQP
VVVSEEKGQYLVVDGFHRQLLGRRESGAGKRLKGWLPVTCINPERKGKAERIASTIRHNRARGKHQIASMSDIVRDLARL
GWADERIGKELGMDRDEVLRLKQISGLTELFEEEDFSPAWTVR

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=197, Percent_Identity=57.3604060913706, Blast_Score=238, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23176; Mature: 23045

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLITRYFSQQLSDDEKVAALNHFRLTLHELSPFAREPVDLVLWVKASEVVANDYNPNV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEHHHHHHCCCCCCE
MAAGEKKLLQHSLQEDGFTQPVVVSEEKGQYLVVDGFHRQLLGRRESGAGKRLKGWLPVT
EECCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHCCCCCCCCCCCCCCEEEE
CINPERKGKAERIASTIRHNRARGKHQIASMSDIVRDLARLGWADERIGKELGMDRDEVL
EECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
RLKQISGLTELFEEEDFSPAWTVR
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASLITRYFSQQLSDDEKVAALNHFRLTLHELSPFAREPVDLVLWVKASEVVANDYNPNV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEHHHHHHCCCCCCE
MAAGEKKLLQHSLQEDGFTQPVVVSEEKGQYLVVDGFHRQLLGRRESGAGKRLKGWLPVT
EECCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHCCCCCCCCCCCCCCEEEE
CINPERKGKAERIASTIRHNRARGKHQIASMSDIVRDLARLGWADERIGKELGMDRDEVL
EECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
RLKQISGLTELFEEEDFSPAWTVR
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]