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The map label for this gene is yrdD [H]

Identifier: 29144366

GI number: 29144366

Start: 4238942

End: 4239484

Strand: Direct

Name: yrdD [H]

Synonym: t4101

Alternate gene names: 29144366

Gene position: 4238942-4239484 (Clockwise)

Preceding gene: 29144365

Following gene: 29144367

Centisome position: 88.46

GC content: 52.85

Gene sequence:

>543_bases
ATGGCTAAATCAGCACTGTTTTCGGTGCGTAAAAATGAGCCCTGCCCGCAGTGCGGGGCCGAACTGGTAATTCGTTCCGG
GAAACATGGTCCGTTTCTCGGCTGTTCTCGCTATCCGGAATGCGATTACGTTCGTCCGCTGAAAAGTCAGGCGGACGGAC
ATATCGTTAAAATTCTGGAGGGGCAACTGTGTCCTGAGTGTGGCGCCGTACTGGTGCTGCGTCAGGGGCGCTTTGGCATG
TTCATCGGATGCAGTCAGTATCCGCAATGTGAACATACAGTGGTTATTGATAAACCGGATGAAACGGCGATTGCCTGTCC
AGCCTGCCAGCAAGGACATTTGGTCCAGCGCCGTTCTCGTTACGGTAAAATCTTTCATTCCTGCGATCGCTACCCGGAAT
GTCAGTTCGTCATTAACTTCACACCGGTTGCGGGGGAATGCCCCGAGTGCCATTATTCGCTACTCATCGAAAAGAAAACC
GCGCAGGGCGTGAAGCGCTTTTGCGCCAGTAAACAATGTGGAAAGCCGGTTCCGGTGGAATAA

Upstream 100 bases:

>100_bases
TTCCGGGCTGTGAAAACGCCTATCAGCAAATGGAAGAATTACTCTTTGAGGTAAATGAAGGTATGCTGCATTGATAGGTG
TTAATGCTGCATGAGTGAAT

Downstream 100 bases:

>100_bases
ACAAGTGAATAATAACCTGCCAACAGGATCTAGCGCCGCGGTGGTAGATCTCCTGAATAAAGAAAATGTCATCGCTTATC
CAACAGAAGCCGTTTTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGM
FIGCSQYPQCEHTVVIDKPDETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKT
AQGVKRFCASKQCGKPVPVE

Sequences:

>Translated_180_residues
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGM
FIGCSQYPQCEHTVVIDKPDETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKT
AQGVKRFCASKQCGKPVPVE
>Mature_179_residues
AKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGMF
IGCSQYPQCEHTVVIDKPDETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKTA
QGVKRFCASKQCGKPVPVE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=180, Percent_Identity=84.4444444444444, Blast_Score=320, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 19980; Mature: 19849

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILE
CCCCHHHHCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEC
GQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPDETAIACPACQQGHLVQRRSR
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHH
YGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKTAQGVKRFCASKQCGKPVPVE
HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILE
CCCHHHHCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEC
GQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPDETAIACPACQQGHLVQRRSR
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHH
YGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKTAQGVKRFCASKQCGKPVPVE
HHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]