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The map label for this gene is yrdC [H]

Identifier: 29144367

GI number: 29144367

Start: 4239489

End: 4240061

Strand: Direct

Name: yrdC [H]

Synonym: t4102

Alternate gene names: 29144367

Gene position: 4239489-4240061 (Clockwise)

Preceding gene: 29144366

Following gene: 29144368

Centisome position: 88.47

GC content: 54.1

Gene sequence:

>573_bases
GTGAATAATAACCTGCCAACAGGATCTAGCGCCGCGGTGGTAGATCTCCTGAATAAAGAAAATGTCATCGCTTATCCAAC
AGAAGCCGTTTTCGGCGTCGGCTGCGATCCCGATAGTGAAACAGCCGTTACGCGCCTGCTGGCGTTAAAACAACGGCCCG
TCGATAAGGGACTCATTTTGATTGCCGCCAGCTTTGAGCAGTTAAAACCTTATATTGATGACAGCATACTTACCGCCGCA
CAGCGTAAAGCGGTATTTGATTGCTGGCCCGGGCCGGTAACGTTTGTTTTTCCTGCGCCCGCGACAACGCCGCGGTGGCT
CACGGGACGTTTTGATTCCCTGGCCGTTCGTGTTACCAACCACCCGCTGGTGGTCGCGCTATGCAATGCGTATGGCAAAC
CGCTGGTTTCCACCAGCGCCAATCTGAGCGGATTACCGCCATGCCGTACCGTTGAAGAGGTGCGTGCGCAATTTGGCGAT
GATTTTCCGGTGGTTGAAGGCGCAACGGGTGGGCGTTTAAATCCTTCAGAAATCCGCGATGCTCTGACGGGCGAACTATT
TCGACAGGGGTAA

Upstream 100 bases:

>100_bases
TGCCATTATTCGCTACTCATCGAAAAGAAAACCGCGCAGGGCGTGAAGCGCTTTTGCGCCAGTAAACAATGTGGAAAGCC
GGTTCCGGTGGAATAAACAA

Downstream 100 bases:

>100_bases
TATGATGGAAGCCTATGCTGTTTTTGGAAATCCGATTGCGCACAGCAAATCGCCATTTATTCATCAGCAATTTGCTCAGC
AGCTAGATATTGTTCACCCC

Product: ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG

Sequences:

>Translated_190_residues
MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG
>Mature_190_residues
MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAA
QRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
DFPVVEGATGGRLNPSEIRDALTGELFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=84.2105263157895, Blast_Score=330, Evalue=4e-92,
Organism=Escherichia coli, GI87081864, Length=132, Percent_Identity=28.030303030303, Blast_Score=65, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=187, Percent_Identity=26.7379679144385, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20354; Mature: 20354

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLIL
CCCCCCCCCCHHEEEECCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
IAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTN
EEECHHHHHHHHCHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEECC
HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGDDFPVVEGATGGRLNPSEIRD
CCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
ALTGELFRQG
HHHHHHHHCC
>Mature Secondary Structure
MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLIL
CCCCCCCCCCHHEEEECCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
IAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTN
EEECHHHHHHHHCHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEECC
HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGDDFPVVEGATGGRLNPSEIRD
CCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
ALTGELFRQG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA