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The map label for this gene is yrfC [H]

Identifier: 29144283

GI number: 29144283

Start: 4169489

End: 4170028

Strand: Direct

Name: yrfC [H]

Synonym: t4016

Alternate gene names: 29144283

Gene position: 4169489-4170028 (Clockwise)

Preceding gene: 29144282

Following gene: 29144284

Centisome position: 87.01

GC content: 58.52

Gene sequence:

>540_bases
ATGGCGCATTCTGTCAATTTGCTTCCCTGGCGGCGCCAACATTATGTAGCGCGTCTGCGGCTGTGGTGCGTGGTATGGGG
CGCGTCCCTGCTGCTGATAGCAAGCCTCGCGACGATCGCCCGGTTGGTTTTTTGGCAGGAGGGGAGGATTAATGAACTGC
TACTGACGGCGGAAAACGGACGCACGACGGCGCTTGCGGCGAACATACCGCAGTTGCAGCAGCGTCAGCGACAGCAACAG
GCGCGATTACAACGTCAGGCGCAGCGTGAACTGACGCAAGCCTGGCAATCTATCTTGACTGACCTTGCCAACCTGTTGCC
AGAGCAGGCATGGCTGACAAGCCTCAATTATCAGCAAGAGACGCTAGAGCTGGAAGGGCTGGCGAGAACGTTTGACGCCC
TGCTCACGCTTGAGACATCACTTCGTCACTATGTCAGTTTTCCGCTAAACCGCACGGGCGCCACGCGGCAGGATGCGCAA
GGGCGCTGGCAGTTCCATTATCAGTTAACGAGGAGCGCCGCCCGTGAACGCGCTCTTTGA

Upstream 100 bases:

>100_bases
TCGACCCCTGGCGCGCCGTTACCGTCCGCCAACCGCCGGTTCCGCCGGACGGTTATCGCTTTGCGATTGCGCTGGGTTTA
GCCATGGGGGAGATACGCTG

Downstream 100 bases:

>100_bases
TATCTGGTACGGGATGTCGCGCCGTGGTCGGGTTTTTTGTTGGTGTGCAGGCGTGCTGTGCCTGACGCTGACGGTCGCGT
TATCTGTGGGCTATCCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVFWQEGRINELLLTAENGRTTALAANIPQLQQRQRQQQ
ARLQRQAQRELTQAWQSILTDLANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQ
GRWQFHYQLTRSAARERAL

Sequences:

>Translated_179_residues
MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVFWQEGRINELLLTAENGRTTALAANIPQLQQRQRQQQ
ARLQRQAQRELTQAWQSILTDLANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQ
GRWQFHYQLTRSAARERAL
>Mature_178_residues
AHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVFWQEGRINELLLTAENGRTTALAANIPQLQQRQRQQQA
RLQRQAQRELTQAWQSILTDLANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQG
RWQFHYQLTRSAARERAL

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: COG3166

COG function: function code NU; Tfp pilus assembly protein PilN

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789796, Length=179, Percent_Identity=49.1620111731844, Blast_Score=131, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007813 [H]

Pfam domain/function: PF05137 PilN [H]

EC number: NA

Molecular weight: Translated: 20784; Mature: 20653

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVFWQEGRINELLLTAENG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
RTTALAANIPQLQQRQRQQQARLQRQAQRELTQAWQSILTDLANLLPEQAWLTSLNYQQE
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHH
TLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQGRWQFHYQLTRSAARERAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVFWQEGRINELLLTAENG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
RTTALAANIPQLQQRQRQQQARLQRQAQRELTQAWQSILTDLANLLPEQAWLTSLNYQQE
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHH
TLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQGRWQFHYQLTRSAARERAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]