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The map label for this gene is yrfB [H]

Identifier: 29144284

GI number: 29144284

Start: 4170012

End: 4170485

Strand: Direct

Name: yrfB [H]

Synonym: t4015

Alternate gene names: 29144284

Gene position: 4170012-4170485 (Clockwise)

Preceding gene: 29144283

Following gene: 29144285

Centisome position: 87.02

GC content: 59.7

Gene sequence:

>474_bases
GTGAACGCGCTCTTTGATATCTGGTACGGGATGTCGCGCCGTGGTCGGGTTTTTTGTTGGTGTGCAGGCGTGCTGTGCCT
GACGCTGACGGTCGCGTTATCTGTGGGCTATCCCGGCTGGAAGACGCTGGATACGCAACATGCGCGGTTAAGCCAGCAGC
GCGAGGCCGCCCGGCAACAGTGGCGTCATCTGCGCCGTCTGAGCGTCGCGGCTGAACCGCTTTTCGGGCGTACCATCGAA
AATCCGCGTCCTTTTTCGCCGTTAGATTTCCAGGCGCCTCCCTTGCGTTTGCTGCACTGGCAGCCATCGGCGCAGGGGGG
AGAAATGGCGCTGAAAACGTCCTGGGATGCGGTGCCGTCGCTGTTTGTCCGGTTGGCCGAAAGCGAGATGAGCGTAAGTC
GGTTTTCATTGCGTAGGGAGGGGGCGGAATTATTGATAACGCTGCAACTGGAGCGACTGGCGAATGAAGGTTAG

Upstream 100 bases:

>100_bases
CGTCACTATGTCAGTTTTCCGCTAAACCGCACGGGCGCCACGCGGCAGGATGCGCAAGGGCGCTGGCAGTTCCATTATCA
GTTAACGAGGAGCGCCGCCC

Downstream 100 bases:

>100_bases
CCGCGGTGTATTGCTCTGTTTTTGTTTGCTGACGTTGACGGGAATGCGCGATCCCTTCCGCCCGCCGGAAGATCGCTGCC
GGATAGCGGAACTCTCGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLDTQHARLSQQREAARQQWRHLRRLSVAAEPLFGRTIE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG

Sequences:

>Translated_157_residues
MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLDTQHARLSQQREAARQQWRHLRRLSVAAEPLFGRTIE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG
>Mature_157_residues
MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLDTQHARLSQQREAARQQWRHLRRLSVAAEPLFGRTIE
NPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789795, Length=151, Percent_Identity=48.3443708609272, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17895; Mature: 17895

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLDTQHARLSQQREAARQQ
CCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
WRHLRRLSVAAEPLFGRTIENPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPS
HHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
LFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCC
>Mature Secondary Structure
MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLDTQHARLSQQREAARQQ
CCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
WRHLRRLSVAAEPLFGRTIENPRPFSPLDFQAPPLRLLHWQPSAQGGEMALKTSWDAVPS
HHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
LFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]