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The map label for this gene is yraR [H]

Identifier: 29143524

GI number: 29143524

Start: 3279648

End: 3280283

Strand: Reverse

Name: yraR [H]

Synonym: t3188

Alternate gene names: 29143524

Gene position: 3280283-3279648 (Counterclockwise)

Preceding gene: 29143526

Following gene: 29143519

Centisome position: 68.45

GC content: 58.65

Gene sequence:

>636_bases
ATGAGTCAGGTACTGATTACCGGCGCGACCGGACTGGTCGGCGGACATCTGCTGAGAATGTTAATCAACACGCCGCAGGT
GAGCGCGATCGCCGCGCCAACGCGTCGCCCGCTGACGGATATTGTCGGCGTTTATAACCCTCACGATCCGCAGCTTACCG
ACGCGTTAGCTCAGGTGACCGACCCGGTGGATATTGTTTTTTGCTGCCTGGGCACGACCCGGCGTGAAGCGGGAAGTAAA
GCGGCGTTTATTCATGCGGATTATACGCTGGTGGTTGATACCGCGCTGACCGGGCGTCGACTGGGCGCGCAGCACATGTT
GGTGGTCAGCGCAATGGGAGCAAACGCGCACTCTCCGTTTTTCTACAATCGGGTGAAAGGAGAAATGGAGGAGGCGTTAA
TCGCGCAAAATTGGCCTCGTTTGACGATTGCCCGGCCTTCTATGCTGCTCGGCGACAGAACAACGCGGCGGGTGAATGAA
ACGCTTTTCGCTCCGCTATTCCGGCTGCTGCCAGGAAACTGGAAATCGATCGATGCGCGGGATGTGGCGCGGGCCATGCT
GGCGGAAGCGCTGGAGCCAGCACAAGAAGGCGTGACGATTCTGACCTCATCGCAACTGCGGGAAAAAGCGGGGTAG

Upstream 100 bases:

>100_bases
AGGCAAATTTTCCACAATGATGGATACTTACCTCGTAGACTATTAAGCCTGGTCGATAGGGCCGAGAGTGCAAGGTGGAC
AAATCTGTAAAGGAGCGAGG

Downstream 100 bases:

>100_bases
CGAAGCCGGATGATTTACCGGATGGCGACGCGATTTACACATTTTTATCGCCACCCGGCACACCGGTTACTTAATATACG
TAAAGGCGGTGGTCACGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSK
AAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNE
TLFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG

Sequences:

>Translated_211_residues
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSK
AAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNE
TLFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG
>Mature_210_residues
SQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKA
AFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNET
LFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728168, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728164, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728166, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=6e-22,
Organism=Escherichia coli, GI87082218, Length=210, Percent_Identity=88.0952380952381, Blast_Score=392, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI71983631, Length=217, Percent_Identity=30.8755760368664, Blast_Score=101, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320840, Length=158, Percent_Identity=33.5443037974684, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 22898; Mature: 22767

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVT
CCCEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHC
DPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARAMLAEALEPAQEGVTILTSSQLREKAG
HHHHHHHHHHHHHHHCCEEEEEHHHHHHHCC
>Mature Secondary Structure 
SQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVT
CCEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHC
DPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARAMLAEALEPAQEGVTILTSSQLREKAG
HHHHHHHHHHHHHHHCCEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]