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The map label for this gene is gatR [H]

Identifier: 29143518

GI number: 29143518

Start: 3274122

End: 3274895

Strand: Direct

Name: gatR [H]

Synonym: t3182

Alternate gene names: 29143518

Gene position: 3274122-3274895 (Clockwise)

Preceding gene: 29143517

Following gene: 29143520

Centisome position: 68.33

GC content: 50.52

Gene sequence:

>774_bases
ATGAACTCATTTGAGCGAAGAAATAAAATTGTCGACCTGATTAATACGCAAGGCAGCGTGCTGGTGATGGACCTTTCAAA
TACCTTTGGTATTTCTGAAGTGACTATCCGTGCTGACCTGCGTCTGCTGGAAGAGAAAGGCCTTGTCACCCGTTTTCATG
GCGGCGCGGCAAAACCGGGAAGTCATCTGGCGGAAGGCGACAATCAGGAAGTCATTCTGGAAGATCGGTATCAACTCGCC
AGCGATCCGAAAAAGCGGATTGCCCAGGCGGCTGCGGCAATGGTTGAAGAAGGAATGACCATCATTCTGGATAGCGGGAG
CACAACATTACTAATTGCGGAAGCGCTCGCGCGAAAAAGCAATATTACGGTGATCACTAACAGCTTGCCTGCCGCTTTTA
CGCTATCAGAAAATAAAGATCTCACGCTGGTGGTTTGCGGCGGTACGGTACGGCATAAAACCCACTCAATGCACGGCACG
ATTGCGGAACGATCGCTACACGGCATCAGCGCCGATGTCATGTTTGTCGGGGCGGATGGCATTGATGCGACAAACGGTAT
TACCACGTTTAACGAAGGTTATTCCATTAGCGGCGTCATGGCGGCGGCGGCGCACAAAGTTATCGCGGTACTGGACGCGA
CCAAATTTAACCGTCGCGGCTTTAACCAGGTATTGCCGATGGACAAGATCGACTGTGTGATAACCGATGACACCATCAGC
AAACAGGATAAAGCGGCATTAGCGAAAACAGGCGTGGAATTAATGATCGTCTAA

Upstream 100 bases:

>100_bases
CAGCAACCTGCGCTGGCTCACATTTCCTTTCGAAATTTAGCGTTCACCTTTCGCAATCCTTCGTTTAAACTAGTTACAGT
TAATTATCAGGCAAATCAAT

Downstream 100 bases:

>100_bases
AAAGGAGTCGGTTATGCATTGCTGATCGCGAGAGTAAGCCCAAAGGAAAGGTCCGGCCCGCTATCACCGCCCAATGCCCC
CATCACTTTACCCACATCAA

Product: galactitol utilization operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLA
SDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT
IAERSLHGISADVMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTIS
KQDKAALAKTGVELMIV

Sequences:

>Translated_257_residues
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLA
SDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT
IAERSLHGISADVMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTIS
KQDKAALAKTGVELMIV
>Mature_257_residues
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLA
SDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT
IAERSLHGISADVMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTIS
KQDKAALAKTGVELMIV

Specific function: Repressor of the gat operon for galacticol transport and metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=35.8267716535433, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789059, Length=257, Percent_Identity=36.1867704280156, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI226510968, Length=257, Percent_Identity=31.9066147859922, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789829, Length=241, Percent_Identity=32.3651452282158, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788069, Length=239, Percent_Identity=29.2887029288703, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=28.0632411067194, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787540, Length=261, Percent_Identity=30.6513409961686, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1789170, Length=236, Percent_Identity=30.5084745762712, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787063, Length=237, Percent_Identity=25.7383966244726, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790635, Length=272, Percent_Identity=24.6323529411765, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790753, Length=233, Percent_Identity=25.7510729613734, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27525; Mature: 27525

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2 ; PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG
CCCHHHHHHHEEEECCCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCEEEECCCCCCCC
SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALARKS
CCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHCCC
NITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADVMFVGADG
CEEEEECCCCEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHCCCCEEEEEEECCC
IDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTIS
CCCCCCEEECCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
KQDKAALAKTGVELMIV
CHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVTRFHGGAAKPG
CCCHHHHHHHEEEECCCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCEEEECCCCCCCC
SHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTIILDSGSTTLLIAEALARKS
CCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHCCC
NITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGTIAERSLHGISADVMFVGADG
CEEEEECCCCEEEEECCCCCEEEEEECCCEECCCCCCCCHHHHHHHCCCCEEEEEEECCC
IDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTIS
CCCCCCEEECCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
KQDKAALAKTGVELMIV
CHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 7772602; 1661252 [H]