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The map label for this gene is ygjR [H]

Identifier: 29143482

GI number: 29143482

Start: 3233966

End: 3235000

Strand: Direct

Name: ygjR [H]

Synonym: t3143

Alternate gene names: 29143482

Gene position: 3233966-3235000 (Clockwise)

Preceding gene: 29143481

Following gene: 29143483

Centisome position: 67.49

GC content: 53.43

Gene sequence:

>1035_bases
TTGACGAAAATCCCTTTCTGGAGTCCGCTGACGTTTATGATACGTTTCGCTGTAATTGGGACTAACTGGATCACGCGCCA
GTTTGTCGACGCCGCCCATGAAACCGGCAAATTCAGGCTCGCCGCCGTTTACTCCCGTAGACTTGAACAGGCGCAGTCTT
TCGCAAATGATTATCCCGTCGAGCATCTGTTTACCTCGCTGGAAGCGATGGCGCAAAGCGACGCGATTGAGGCGGTTTAT
ATCGCCAGCCCGAATTCCCTGCATTTCTCCCAGACGCAGCGCTTTTTGCAGCATAAAAAACATGTCATGTGCGAAAAGCC
GCTGGCTTCTAACCTGGCGGAGGTTGATGCCGCTATCGCCTGCGCGCGCGATAATCAGCGGGTACTGTTTGAAGCCTTTA
AAACCGCCTGCCTGCCCAATTTCCTGCTGCTGCGGGAATCGTTGCCGAAAATCGGCAGAATGCATAAAGCATTACTAAAT
TACTGCCAGTACTCTTCACGTTATCAGCGCTATCTGAACGGTGAAAATCCGAATACGTTTAATCCGGCCTTCTCCAATGG
TTCGATTATGGATATCGGGTATTACTGTCTGGCGTCGGCGATCGCGCTATGGGGCGAGCCGCGCAGCGTTCAGGCGTCGG
CGAATTTATTGGAAAGCGGAGTAGATGCACACGGCGTCGTGGTTATGGATTACGGCGATTTTAGCGTCACGCTACAGCAT
TCCAAAGTCAGCGACTCGGTACTGGCCAGTGAAATTCAGGGCGAGAGGGGATCGCTGGTCATTGAAAAGCTGTCGGAATG
CCAGAAAGTGTGTTTTGCGCCGCGCGGCGCGCTGATGCAGGATCTGACCCAGCCTCAGCATATTAATACCATGCTGTATG
AAGCCGGGGCGTTTGCCCAGCTTATTGAAAACCACGCCGTGGAACATCCGGGGTTGTCGCTAAGTCGCGCCACGGCAAAA
TGGCTGACAGAAATACGCCGTCAAACCGGGGTCATCTTCCCGGCGGACGATCTGACTCATCCCCCTACTGCGTAA

Upstream 100 bases:

>100_bases
CGTCACTATTGGGGCTGATAGCGCACACGGGTGCCCTTCTCGCCAGTAAAATGCCAGAGTGCGTCGCAGCGCACTGGCAA
GGGCGGAAAGGCGTGCTACA

Downstream 100 bases:

>100_bases
AATTATGTAAATCGTATGTTACAGGTCATTGACTCTACGCGTGGCCTGTCATACTTTGTTACGCGCAAAGGGGAGTAACT
TCATTGCCGGTCGATCGTCA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTKIPFWSPLTFMIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVY
IASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLN
YCQYSSRYQRYLNGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQH
SKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAK
WLTEIRRQTGVIFPADDLTHPPTA

Sequences:

>Translated_344_residues
MTKIPFWSPLTFMIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVY
IASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLN
YCQYSSRYQRYLNGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQH
SKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAK
WLTEIRRQTGVIFPADDLTHPPTA
>Mature_343_residues
TKIPFWSPLTFMIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFANDYPVEHLFTSLEAMAQSDAIEAVYI
ASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNY
CQYSSRYQRYLNGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQHS
KVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQLIENHAVEHPGLSLSRATAKW
LTEIRRQTGVIFPADDLTHPPTA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=355, Percent_Identity=25.6338028169014, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI145693182, Length=326, Percent_Identity=83.1288343558282, Blast_Score=579, Evalue=1e-166,
Organism=Drosophila melanogaster, GI24581117, Length=349, Percent_Identity=25.214899713467, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24581115, Length=344, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38392; Mature: 38261

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIPFWSPLTFMIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFANDYPV
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
EHLFTSLEAMAQSDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIA
HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYLNGENPNTF
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQH
CCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEEEC
SKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQ
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHH
LIENHAVEHPGLSLSRATAKWLTEIRRQTGVIFPADDLTHPPTA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure 
TKIPFWSPLTFMIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFANDYPV
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
EHLFTSLEAMAQSDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAEVDAAIA
HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
CARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYLNGENPNTF
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMDYGDFSVTLQH
CCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEEEC
SKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHINTMLYEAGAFAQ
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHH
LIENHAVEHPGLSLSRATAKWLTEIRRQTGVIFPADDLTHPPTA
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]