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The map label for this gene is visC [H]

Identifier: 29143324

GI number: 29143324

Start: 3065154

End: 3066356

Strand: Reverse

Name: visC [H]

Synonym: t2974

Alternate gene names: 29143324

Gene position: 3066356-3065154 (Counterclockwise)

Preceding gene: 29143325

Following gene: 29143323

Centisome position: 63.99

GC content: 57.02

Gene sequence:

>1203_bases
GTGCAAAGTGTTGATGTAGCAATAGTTGGCGGAGGCATGGTGGGACTGGCTGTCGCCTGCGGCTTGCAGGGGAGCGGTTT
GCGCGTTGCGGTACTGGATCACGTTGTTCCCCAGCAGTTGGCGAACGATGCGCCGCCTCAGCTTCGGGTGTCGGCGATTA
ATGCCGCCAGCGAAAAACTGCTTACCCGTCTTGGCGTATGGTCAAACATTGTGGCGCGACGGGCAAGTTGCTACCACGGT
ATGGAAGTCTGGGATAAAGACAGCTTTGGCCGTATTACGTTTGATGACGCAAGCATGGGATATAGCCATCTGGGGCATAT
TGTTGAAAACAGCGTCATTCACTATGCACTGTGGCAAAAAGCGCAGCAAGCGGCGGATATCACCTTAATGGCGCCAGCGG
AGTTACAGCAGGTTGCCTGGGGAGAGAATGACGCCTTCCTGACTTTAAAAGACGGCGCGATGTTAACCGCGCGTCTGGTG
ATTGCCGCGGATGGCGCCAACTCCTGGCTGCGTAACAAAGCGGATATTCCCTTAACTTTCTGGGACTACCGTCACCATGC
GCTGGTAGCGACTATCCGCACCGAAGAGCCGCACGGCGCGGTTGCTCGCCAGGTGTTTCATGGTGAAGGTATTCTGGCGT
TTTTGCCGTTAAGCGATCCGCATCTGTGTTCCATTGTCTGGTCGCTTTCTCCGCAGGATGCGGAGCGTATGCAACAGAGC
GGCGACGAGGCGTTTAACCAGGCGTTGACTATCGCCTTCGATAATCGGCTGGGCTTATGCCGCCTGGAAAGCGAACGGCA
GGTTTTTCCGCTGACGGGCCGCTATGCTCGCCAGTTTGCCGCGCATCGTCTGGCGTTGGTCGGCGATGCCGCGCACACCA
TCCATCCGCTGGCAGGGCAAGGCGTCAACCTCGGTTTTATGGACGCGGCCGAACTGGTGGACGATCTGTGCCGGCTTCAG
CGCCAGGGCAAAGACATTGGCCAACATCTTTATCTCCGTCGTTATGAGCGTAGCCGTAAACATAGCGCGGCGATGATGCT
TGCCGGGATGCAAGGTTTTCGTGACCTGTTTGCCGGCGAAAACCCGGCAAAAAAATTGCTGCGCGACATCGGACTGAAAC
TGGCGGACACGCTCCCCGGCGTCAAACCCCAACTGCTTCGCCAGGCAATGGGGCTAAACGACCTTCCGCAATGGCTTCGT
TAA

Upstream 100 bases:

>100_bases
ACGCCGCCATCCGGCATCGTGTTCGTAAAAATGCCGGATGGCGGCGTAAACGCCTTATCCGGCCTACGGTTTTGATTGTT
CCGGTTTCCAGGAGTAAATA

Downstream 100 bases:

>100_bases
GCGTCTGACTGCACGCCAGCAAGAGTTTGAAACCCGTCACACTTTGCTTTCCCGGCTATCGCGCCGGGGGGCTTTCCTCG
TTTGAAATAATCTAATTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDAPPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHG
MEVWDKDSFGRITFDDASMGYSHLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV
IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPQDAERMQQS
GDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLCRLQ
RQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGLNDLPQWLR

Sequences:

>Translated_400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDAPPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHG
MEVWDKDSFGRITFDDASMGYSHLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV
IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPQDAERMQQS
GDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLCRLQ
RQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGLNDLPQWLR
>Mature_400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDAPPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHG
MEVWDKDSFGRITFDDASMGYSHLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV
IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPQDAERMQQS
GDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLCRLQ
RQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGLNDLPQWLR

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=381, Percent_Identity=31.496062992126, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI32967307, Length=347, Percent_Identity=31.1239193083574, Blast_Score=144, Evalue=2e-34,
Organism=Escherichia coli, GI1789273, Length=400, Percent_Identity=87, Blast_Score=729, Evalue=0.0,
Organism=Escherichia coli, GI1786883, Length=391, Percent_Identity=38.3631713554987, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1789274, Length=393, Percent_Identity=30.7888040712468, Blast_Score=164, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI25146631, Length=431, Percent_Identity=32.2505800464037, Blast_Score=176, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6321694, Length=455, Percent_Identity=25.2747252747253, Blast_Score=109, Evalue=7e-25,
Organism=Drosophila melanogaster, GI19920760, Length=384, Percent_Identity=32.8125, Blast_Score=171, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43987; Mature: 43987

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDAPPQLRVSAINAASEKL
CCCCEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
LTRLGVWSNIVARRASCYHGMEVWDKDSFGRITFDDASMGYSHLGHIVENSVIHYALWQK
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLVIAADGANSWLRNKADIPLTF
HHHHCCEEEECHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCEEE
WDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPQDAERMQQS
ECCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHC
GDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQ
CHHHHHCEEEEEECCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
GVNLGFMDAAELVDDLCRLQRQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFRDLFAGE
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPAKKLLRDIGLKLADTLPGVKPQLLRQAMGLNDLPQWLR
CHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCHHHHC
>Mature Secondary Structure
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDAPPQLRVSAINAASEKL
CCCCEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
LTRLGVWSNIVARRASCYHGMEVWDKDSFGRITFDDASMGYSHLGHIVENSVIHYALWQK
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLVIAADGANSWLRNKADIPLTF
HHHHCCEEEECHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCEEE
WDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPQDAERMQQS
ECCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHC
GDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQ
CHHHHHCEEEEEECCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHCCCCHHHHCCCCCC
GVNLGFMDAAELVDDLCRLQRQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFRDLFAGE
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPAKKLLRDIGLKLADTLPGVKPQLLRQAMGLNDLPQWLR
CHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]