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The map label for this gene is ygeR [H]

Identifier: 29143306

GI number: 29143306

Start: 3045592

End: 3046344

Strand: Reverse

Name: ygeR [H]

Synonym: t2956

Alternate gene names: 29143306

Gene position: 3046344-3045592 (Counterclockwise)

Preceding gene: 29143308

Following gene: 29143304

Centisome position: 63.57

GC content: 53.92

Gene sequence:

>753_bases
TTGAGCGCAGGACGCCTGAACAAAAATAGCCTGGGTATTGCGGTGCTGTTATGCACAGGGCTGCTGCTGGCGGGGTGTTC
CAGTAATTCCGGCTCAGGAACGTATTCCGGCTCCGTCTATACCGTTAAGCGCGGCGATACGTTGTATCGTATATCGCGCG
CTACGGGAACCAGCGTGAAAGAACTGGCCCGACTGAATGGCATTTCTCCGCCTTATACTATTGAGGTGGGGCAGCGAATT
AAAGTGCGCGGCAGCGCAAAGAGTAGCAGTTCAACACGCAAAACCAGCAATAAAACAGCAACAAAAACTGCTGCGGTCAG
ACCGTCATCTTCGGTGCCAAAATCCTCCTGGCCGCCGGTGGGGCAGCGTTGTTGGGTATGGCCTGCTAACGGTAAAGTGA
TTTTACCTTATTCCACCGCGGAGGGCGGAAATAAGGGGATCGATATTGCGGGCGCGCGCGGAACGCCTGTTTATGCGGCG
GGAGCGGGTAAAGTTGTCTATGTCGGGAACCAGCTGCGCGGTTACGGCAATCTCATCATGATTAAGCACAATGAAGATTA
CATTACGGCTTACGCTCATAATGACACCATGCTGGTTAATAATGGACAAAGCGTTAAAGCGGGGCAAAAAATCGCTACGA
TGGGCAGCACGGATGCCGCATCCGTAAGACTACACTTCCAGATTCGCTACCGGGCGACGGCCATCGATCCGCTGCGTTAT
CTGCCGCCGCAGGGGAGTAAACCGAAGTGCTGA

Upstream 100 bases:

>100_bases
GGCATCATCATCCACACGGACCCTTTCCGGCGTCAATGGATTGGGCATACGGCATTTGGCTGCTATCATAAGGCGTCTGT
CAATAGAGTGAGGAATGGTT

Downstream 100 bases:

>100_bases
CGGCGAATTAATCGCCAGTCAGCCAGTAAGTCTCTTGCCAACCAGAGCGTAAGGTTTATAATGCCTTACGCATCTCAAAG
CGGGCGTAGTTCAATGGTAG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRI
KVRGSAKSSSSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAA
GAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
LPPQGSKPKC

Sequences:

>Translated_250_residues
MSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRI
KVRGSAKSSSSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAA
GAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
LPPQGSKPKC
>Mature_249_residues
SAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRIK
VRGSAKSSSSTRKTSNKTATKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAAG
AGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYL
PPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=252, Percent_Identity=85.7142857142857, Blast_Score=439, Evalue=1e-125,
Organism=Escherichia coli, GI1789099, Length=263, Percent_Identity=43.7262357414449, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=33.0708661417323, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26426; Mature: 26295

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVK
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCCHH
ELARLNGISPPYTIEVGQRIKVRGSAKSSSSTRKTSNKTATKTAAVRPSSSVPKSSWPPV
HHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
GQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNLIM
CCEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEE
IKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
EEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHHH
LPPQGSKPKC
CCCCCCCCCC
>Mature Secondary Structure 
SAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTVKRGDTLYRISRATGTSVK
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCCHH
ELARLNGISPPYTIEVGQRIKVRGSAKSSSSTRKTSNKTATKTAAVRPSSSVPKSSWPPV
HHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
GQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVYAAGAGKVVYVGNQLRGYGNLIM
CCEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEE
IKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRY
EEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEECCHHH
LPPQGSKPKC
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]