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The map label for this gene is stdA [H]

Identifier: 29143291

GI number: 29143291

Start: 3033973

End: 3034554

Strand: Reverse

Name: stdA [H]

Synonym: t2940

Alternate gene names: 29143291

Gene position: 3034554-3033973 (Counterclockwise)

Preceding gene: 161486787

Following gene: 29143290

Centisome position: 63.33

GC content: 52.41

Gene sequence:

>582_bases
ATGCGTAATAAAATAATACTTGCCATGGCGGCTGCCGGTATGATGTATGGCGCTTCTGTATATGCAGTCGATCCACCAAC
AGCAGGCCCGTTCGGCTCAGGTAAAATTACCTTTACTGGTACCATCACCAACTCCCCCTGTGATATCGCACCGGGCGACG
ATGCGATCACCGTTCCATTTGGACAGATTTCTTACCGTAAACTGAATACCGCCGATGCAACCACGGACTCAAAACCGTTC
ACCATTCATCTGCAGAACTGTGCTTTCGATCCGAATATCCCGGACACAGCTGGCTCCGCAGGGAAAATGTCCAAAGTGAC
CGTCTCTTTCTCTGGCGGAGCCAATGTCGCGAAAAAGGCTTACACCACCAGCGGCAGCGCACAGCATGTTGGTGTCCAGC
TACTGAAGAGTGACAACACCGCAATTATCGAGCCCAACACCCAGATGCCGGAGGACGACGCTCAGCAACTGCAGGCCGGA
AACAACGAACTCAACTTCTATGCCCGGCTAATAGCACTGGATAATGGCGTCACGCCCGGTGACTTCACCGCATCTGTCAC
CTACACTCTGAAATACCTGTGA

Upstream 100 bases:

>100_bases
TTATTCATGCGAATCTTTTCTGAACGCTTTCATTAATACCCTCAGATTTGTTTTCAGCCTTTGCAAAATAATTCTCATTC
ACCCAAAGGACATATTATCT

Downstream 100 bases:

>100_bases
TTTTACGCGGTAAATAACGACAGGGAGAAGCCGTCCACGGAGGGGTTCGGACGGCTTTTATATCTGACCATGCCTGCGGG
CTGTCTGTTACACGGACGAC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNIPDTAGSAGKMSKVTVSFSGGANVAKKAYTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAG
NNELNFYARLIALDNGVTPGDFTASVTYTLKYL

Sequences:

>Translated_193_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNIPDTAGSAGKMSKVTVSFSGGANVAKKAYTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAG
NNELNFYARLIALDNGVTPGDFTASVTYTLKYL
>Mature_193_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNIPDTAGSAGKMSKVTVSFSGGANVAKKAYTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAG
NNELNFYARLIALDNGVTPGDFTASVTYTLKYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=195, Percent_Identity=32.3076923076923, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789422, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 20223; Mature: 20223

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPF
CCCEEEEEEEECCHHHCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
GQISYRKLNTADATTDSKPFTIHLQNCAFDPNIPDTAGSAGKMSKVTVSFSGGANVAKKA
CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHEE
YTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAGNNELNFYARLIALDNGVTPG
EECCCCCCEEEEEEEECCCEEEECCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCC
DFTASVTYTLKYL
CEEEEEEEEEEEC
>Mature Secondary Structure
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPF
CCCEEEEEEEECCHHHCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
GQISYRKLNTADATTDSKPFTIHLQNCAFDPNIPDTAGSAGKMSKVTVSFSGGANVAKKA
CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHEE
YTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAGNNELNFYARLIALDNGVTPG
EECCCCCCEEEEEEEECCCEEEECCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCC
DFTASVTYTLKYL
CEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]