| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is stdB [H]
Identifier: 29143290
GI number: 29143290
Start: 3031364
End: 3033853
Strand: Reverse
Name: stdB [H]
Synonym: t2939
Alternate gene names: 29143290
Gene position: 3033853-3031364 (Counterclockwise)
Preceding gene: 29143291
Following gene: 29143289
Centisome position: 63.31
GC content: 61.04
Gene sequence:
>2490_bases ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCAGTCAGGGTTGTACCGGTTGCCGGACGCGATGCG GTCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC GCTGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCTGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC GCATTCTGTACCAGACCCGGGTGTCACCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGCAGCGTCCGGACCTGGCAGGTCAACACGGCTAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGTACGCATAACAACAGCACGGCCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCACGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG AGCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGCAGCCAGAATCAGGTCTACGCC ACCATCAGTATCCCGTGGGGCGACAGCCGCCAGGTGAGCTACAGCGTGCAGAAGGATAACCAGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACCGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTACCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCAGAGGAC GTGGACGTTAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAGCCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCCAGTCCACCGTTTGGCGCCCTGGTGGTGTCCGGAAAAACCG GCAGAACCGCGGGGATGGTCGGGGATGACGGTCTGGCCTACCTGACCGGACTCAGCGGGGAAGACCGCCGGACCCTGAAC GTGCCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC CTGCAGATAA
Upstream 100 bases:
>100_bases ACAGGGAGAAGCCGTCCACGGAGGGGTTCGGACGGCTTTTATATCTGACCATGCCTGCGGGCTGTCTGTTACACGGACGA CAACACGAAAGCGCCATGCC
Downstream 100 bases:
>100_bases AAATATCCCTGTCACAGAGCAGGACTAACGGAGAAAACAGGTGAAAAACAGCAGAAGAAGCCGTGTGATTTTACTCGCAC TGGCGGCAGCATGGAGCCAG
Product: outer membrane fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA VVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLN VPWDGRVQCRLTLPETVTLSRGPLLLPCR
Sequences:
>Translated_829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA VVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLN VPWDGRVQCRLTLPETVTLSRGPLLLPCR >Mature_829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA VVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLN VPWDGRVQCRLTLPETVTLSRGPLLLPCR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI87081778, Length=832, Percent_Identity=40.0240384615385, Blast_Score=581, Evalue=1e-167, Organism=Escherichia coli, GI1786332, Length=844, Percent_Identity=29.6208530805687, Blast_Score=322, Evalue=6e-89, Organism=Escherichia coli, GI1787172, Length=845, Percent_Identity=29.8224852071006, Blast_Score=302, Evalue=7e-83, Organism=Escherichia coli, GI1789533, Length=797, Percent_Identity=30.99121706399, Blast_Score=294, Evalue=2e-80, Organism=Escherichia coli, GI1790772, Length=835, Percent_Identity=28.7425149700599, Blast_Score=280, Evalue=3e-76, Organism=Escherichia coli, GI1786744, Length=851, Percent_Identity=29.1421856639248, Blast_Score=274, Evalue=1e-74, Organism=Escherichia coli, GI1788427, Length=813, Percent_Identity=29.1512915129151, Blast_Score=244, Evalue=1e-65, Organism=Escherichia coli, GI1789610, Length=856, Percent_Identity=23.5981308411215, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 89832; Mature: 89832
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLN CCHHHEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCEECCCCEEEEEEEC DQPVREQYPVRVVPVAGRDAVVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSA CCCCHHCCCEEEEEECCCCEEEEEEECCHHHHHCCHHHHHHCCCCCCCCCCCCEEEECCC DSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYSLMVNRYMPQQGET CCCEEEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC STSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG CCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTR HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE VSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLY CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCCC GGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADV CCCCCCCCCCCCEEEECCCCCCCCCCEEECEEEECCCCCCHHEECCCCCCCEEEECCCCC TRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEECCCHHHHHHHCCCCC DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSA CHHCCCCCEEEEEECCCCEEEHHHHEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCC SVSFARNQYTGGGSQNQVYATISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTW EEEEHHCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEE NISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAA EECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECEEEECCEEEEECCCH FSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED HHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMV CCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCEE GDDGLAYLTGLSGEDRRTLNVPWDGRVQCRLTLPETVTLSRGPLLLPCR CCCCEEEEECCCCCCCEEEECCCCCEEEEEEECCCEEEECCCCEEECCC >Mature Secondary Structure MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLN CCHHHEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCEECCCCEEEEEEEC DQPVREQYPVRVVPVAGRDAVVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSA CCCCHHCCCEEEEEECCCCEEEEEEECCHHHHHCCHHHHHHCCCCCCCCCCCCEEEECCC DSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYSLMVNRYMPQQGET CCCEEEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC STSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG CCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTR HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE VSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLY CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCCC GGTHNNSTASPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADV CCCCCCCCCCCCEEEECCCCCCCCCCEEECEEEECCCCCCHHEECCCCCCCEEEECCCCC TRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEECCCHHHHHHHCCCCC DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGELQGLSA CHHCCCCCEEEEEECCCCEEEHHHHEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCC SVSFARNQYTGGGSQNQVYATISIPWGDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTW EEEEHHCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEE NISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAA EECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECEEEECCEEEEECCCH FSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED HHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMV CCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCEE GDDGLAYLTGLSGEDRRTLNVPWDGRVQCRLTLPETVTLSRGPLLLPCR CCCCEEEEECCCCCCCEEEECCCCCEEEEEEECCCEEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]