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The map label for this gene is stdC [H]

Identifier: 29143289

GI number: 29143289

Start: 3030580

End: 3031323

Strand: Reverse

Name: stdC [H]

Synonym: t2938

Alternate gene names: 29143289

Gene position: 3031323-3030580 (Counterclockwise)

Preceding gene: 29143290

Following gene: 29143288

Centisome position: 63.26

GC content: 58.33

Gene sequence:

>744_bases
GTGAAAAACAGCAGAAGAAGCCGTGTGATTTTACTCGCACTGGCGGCAGCATGGAGCCAGTACAGCCCGGCAGCCGTCAA
TGTCGACCGGACCCGTATTATCATGGATGCACCGCAGAAAACGGTGGCCATCACGCTGAATAACGATGACAAAACCACGC
CGTTCCTGGCGCAGTCCTGGGTGACGGACGCTGACGGGGTGAGAACGGATGCGCTGATAGCGCTGCCACCGCTGCAGCGT
ATTGATGCCGGACAGAAATCCCAGGTCCGTATCACCCAGGTTCGCGGGCTGACAGACAAGCTCCCTCAGGACAGGGAAAC
GCTGTTCTGGTTTAACGTGCGGGGCGTTCCCCCGAAGTCAGAAGACGACAACGTCCTGCAACTGGCCATGCAGAGCCAGC
TGAAACTGTTTTACCGTCCGAAAGCCATTATCAGAAGCAGCAGTGACCAGCCGGAAAGAAAGCTGACTGCTGAGCGGAAT
GCGGGACATCTGACCCTCAGAAACCCGACGCCGTACTACATCACTGTGGCGTGGCTGGGAGCAGACCGCAGCCACAGGCT
CAGCGGTTTCCGCGAGGGCGTGATGGTGCCGCCCCTGGGGAGCCTGCCCTTAAAGGCTGTTCTGCCGGCAGAAACCCGGA
CGCTGTGGGTGGGGTATATAGATGATTATGGTGGACTGCAGATGAACCGCTACACCTGTGATGCCCTGAACTGCGCGTTT
AAGGACGCAGGGGTGACATCATGA

Upstream 100 bases:

>100_bases
CTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCCCTGCAGATAAAAATATCCCTGTCACAGAGC
AGGACTAACGGAGAAAACAG

Downstream 100 bases:

>100_bases
CAGAATGGATTTTTAATCTGAAAACAAAACTGACCGTGCTGGTGATGATGTTGTGTTCTTTATGTGTGACTAAAGTGTAT
GCGGTTGAGCCAGGTATAAA

Product: fimbrial chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALIALPPLQR
IDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVPPKSEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN
AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVGYIDDYGGLQMNRYTCDALNCAF
KDAGVTS

Sequences:

>Translated_247_residues
MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALIALPPLQR
IDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVPPKSEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN
AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVGYIDDYGGLQMNRYTCDALNCAF
KDAGVTS
>Mature_247_residues
MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALIALPPLQR
IDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVPPKSEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN
AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVGYIDDYGGLQMNRYTCDALNCAF
KDAGVTS

Specific function: Binds and caps interactive surfaces on pilus subunits to prevent them from participating in non-productive interactions. Facilitates the import of subunits into the periplasm. May facilitate subunit folding. Chaperone-subunit complexes are then targeted t

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786936, Length=216, Percent_Identity=40.2777777777778, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1788677, Length=217, Percent_Identity=37.3271889400922, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI87082203, Length=248, Percent_Identity=37.0967741935484, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790771, Length=221, Percent_Identity=38.0090497737557, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789532, Length=228, Percent_Identity=33.7719298245614, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786333, Length=188, Percent_Identity=34.5744680851064, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787171, Length=221, Percent_Identity=30.7692307692308, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786743, Length=175, Percent_Identity=30.8571428571429, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788428, Length=209, Percent_Identity=30.1435406698565, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081806, Length=216, Percent_Identity=30.0925925925926, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27567; Mature: 27567

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSW
CCCCCCCEEEEEEEEHHHCCCCCEEEECCCEEEEEECCCEEEEEEECCCCCCCCHHHHHH
VTDADGVRTDALIALPPLQRIDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVPPKS
CCCCCCCCCCEEEECCCHHHHCCCCCCCEEEEEECCCHHHCCCCCCEEEEEEEECCCCCC
EDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERNAGHLTLRNPTPYYITVAWLG
CCCHHHHHHHHHHHHEEECCHHHEECCCCCCHHHHHHCCCCCEEEECCCCCEEEEEEEEC
ADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVGYIDDYGGLQMNRYTCDALNCAF
CCCCHHHHHHHCCEECCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEEEEHHHHHEEC
KDAGVTS
CCCCCCC
>Mature Secondary Structure
MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDDKTTPFLAQSW
CCCCCCCEEEEEEEEHHHCCCCCEEEECCCEEEEEECCCEEEEEEECCCCCCCCHHHHHH
VTDADGVRTDALIALPPLQRIDAGQKSQVRITQVRGLTDKLPQDRETLFWFNVRGVPPKS
CCCCCCCCCCEEEECCCHHHHCCCCCCCEEEEEECCCHHHCCCCCCEEEEEEEECCCCCC
EDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERNAGHLTLRNPTPYYITVAWLG
CCCHHHHHHHHHHHHEEECCHHHEECCCCCCHHHHHHCCCCCEEEECCCCCEEEEEEEEC
ADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVGYIDDYGGLQMNRYTCDALNCAF
CCCCHHHHHHHCCEECCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEEEEHHHHHEEC
KDAGVTS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1357526; 10049807; 2478891; 10446050 [H]