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The map label for this gene is kduI

Identifier: 29143280

GI number: 29143280

Start: 3021238

End: 3022074

Strand: Reverse

Name: kduI

Synonym: t2928

Alternate gene names: 29143280

Gene position: 3022074-3021238 (Counterclockwise)

Preceding gene: 29143281

Following gene: 29143279

Centisome position: 63.07

GC content: 51.61

Gene sequence:

>837_bases
GTGGACGTAAGGCAAAGTATCCATAGCGAGCACGCTAAAACGCTGGACACCCAGGCGCTGCGACGCGAGTTTTTAATAGA
AAATATTTTTGTCGCTGATGAATATACGATGGTCTACAGCCATATCGACCGTATTATTGTCGGCGGCATTATGCCCGTCA
GCCATCCCGTTGAAATCGGCGGAGAAGTAGGTAAACAGCTTGGCGTTTCCCGATTACTGGACCGCCGCGAGCTGGGCGTC
ATTAATATTGGCGGCGCGGGCGCCATTATCGTTGACGGGCAGCGCCATGACATTGGTCATCGTGATGCTCTGTATATTGG
TAAAGGGGCGAAAGAGCTGGTCTTCGTCAGCAATGAGGCGAGCAGACCGGCGAAGTTTTATTACAACTGCGCGCCAGCGC
ACACCGCTTATCCGACGAAAAAAGTGTCGCCTGCCGACGTTGCGCCCGTCACCTTAGGCGATAACCTCACCAGTAACCGT
CGCACCATCAATAAATACTTCGTACCGGATGTACTGGAAACCTGTCAGCTCAGTATGGGACTCACCGAACTGGCGCCCGG
CAATCTATGGAACACCATGCCATGCCATACCCATGAGCGCCGTATGGAAGTTTACCTCTATTTCAATATGGAAGAGGACA
GTTGCGTTTTCCATATGATGGGGCAGCCTCAGGAAACCCGTCATATTGTGATGCGTAATGAACAGGCGGTTATTTCCCCA
AGCTGGTCAATACATTCCGGCGTTGGCACCAAAGCCTATACGTTTATTTGGGGCATGGTGGGAGAAAATCAGGTCTTCGA
TGACATGGATCACGTTGCGGTACAAGATCTGCGCTAG

Upstream 100 bases:

>100_bases
TGTTGAAAACCTTTATCCAGGCGACTATGATGCCGTTAAATAAATCAAAACAGTGTTTTGATTTTATGCCGTTGCGATCG
ATTTATCATTGGAGGGAAAA

Downstream 100 bases:

>100_bases
TCGCGACCGGTGATAACGCCTGTGTGACAGGCATGACAAAAATAAGGATTAACAATGATTTTGAATGCATTTTCTCTTGA
AGGTAAAGTCGCGGTTGTGA

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQDLR

Sequences:

>Translated_278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQDLR
>Mature_278_residues
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGV
INIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
SWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQDLR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=85.9712230215827, Blast_Score=516, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_SALA4 (B5F4W4)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002147929.1
- ProteinModelPortal:   B5F4W4
- SMR:   B5F4W4
- GeneID:   6797335
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B3169
- HOGENOM:   HBG301328
- OMA:   MPAHTHD
- ProtClustDB:   PRK00924
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31215; Mature: 31215

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEA
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCEEEEEECCC
SRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNRRTINKYFVPDVLETCQLSMG
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHCC
LTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCEEEEECCEEEECC
SWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQDLR
CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDRIIVGGIMPVSHPVEIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRDALYIGKGAKELVFVSNEA
HHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCCCCCCCEEEECCCCCEEEEEECCC
SRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNRRTINKYFVPDVLETCQLSMG
CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHCC
LTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFHMMGQPQETRHIVMRNEQAVISP
HHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCEEEEECCEEEECC
SWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQDLR
CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA