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The map label for this gene is ygdK [H]

Identifier: 29143247

GI number: 29143247

Start: 2978594

End: 2979037

Strand: Direct

Name: ygdK [H]

Synonym: t2893

Alternate gene names: 29143247

Gene position: 2978594-2979037 (Clockwise)

Preceding gene: 29143246

Following gene: 29143248

Centisome position: 62.16

GC content: 57.21

Gene sequence:

>444_bases
ATGACAAACCCTCTTTATACCGGACACCCGTTCGGCACAACGGTAACGGAAGAGACGTTACGCGCTATCTTTCTCCCGCT
GACCCAATGGGAGGATAAATATCGTCAGTTGATTCTGTTAGGAAAACAGCTCCCCGCTCTGCCGGATGAATGCAAAGCGC
AGGCGAAGGAGATAGCCGGCTGCGAGAACCGCGTCTGGCTGGGCTTTACCCGATCAGATAACGGAACGATGCACTTTTTC
GGCGACAGTGAGGGGCGGATTGTCCGCGGCCTGCTAGCGGTATTGCTCACCGCGGTGGAAGGAAAAAACGCCGCCGAGTT
GCAGGCTCGTTCACCGCTGGCGCTGTTTGATGAGCTGGGTTTACGCGCCCAGCTTAGCGCCTCACGCAGTCAGGGGCTGA
ACGCGCTGAGCGAAGCGATTGTTGCCGCAACGCATAAGGGTTGA

Upstream 100 bases:

>100_bases
CAGGGACTCTGCGCGCCTCTTTTGCGCCGTATAATACCCAACATGATGTGGATGCGTTGGTTAACGCCGTTGACCGCGCG
CTGGAACTGCTGGTGGATTA

Downstream 100 bases:

>100_bases
AATAGCGTAAATATTCTGTCGCCTGACAGCGCCGTCCGCGGCGGTCAGGCGATGCAGATAAAATAATCCAGTCACTTTAT
TAGTTTCGGCATCAGATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQLPALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFF
GDSEGRIVRGLLAVLLTAVEGKNAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG

Sequences:

>Translated_147_residues
MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQLPALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFF
GDSEGRIVRGLLAVLLTAVEGKNAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG
>Mature_146_residues
TNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQLPALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFFG
DSEGRIVRGLLAVLLTAVEGKNAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=146, Percent_Identity=86.986301369863, Blast_Score=263, Evalue=3e-72,
Organism=Escherichia coli, GI1787969, Length=120, Percent_Identity=34.1666666666667, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16023; Mature: 15891

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQLPALPDECKAQAKEIAG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
CENRVWLGFTRSDNGTMHFFGDSEGRIVRGLLAVLLTAVEGKNAAELQARSPLALFDELG
CCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCC
LRAQLSASRSQGLNALSEAIVAATHKG
CHHEHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQLPALPDECKAQAKEIAG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
CENRVWLGFTRSDNGTMHFFGDSEGRIVRGLLAVLLTAVEGKNAAELQARSPLALFDELG
CCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCC
LRAQLSASRSQGLNALSEAIVAATHKG
CHHEHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]