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The map label for this gene is rarD [H]

Identifier: 29143248

GI number: 29143248

Start: 2979310

End: 2980224

Strand: Direct

Name: rarD [H]

Synonym: t2894

Alternate gene names: 29143248

Gene position: 2979310-2980224 (Clockwise)

Preceding gene: 29143247

Following gene: 29143252

Centisome position: 62.17

GC content: 42.51

Gene sequence:

>915_bases
GTGGAAAAATATCTGCGTAGCGGTACCATGTTTGTGGTGCTGGCATTTATATTATGGGGGTTAACACCTTTATATTATCA
ATATTTATCAGGGGGAAATCTCGCACAAATATTGATATACCGGGTGTTCTGGTCAATTCCATTATTACTGGCAGTAAGGT
TGTTATTTCGGCAGCGAACGCGATTTCATGATGCCTGGAAAGATAAAAAATCCTTTTTCTTCTGCATGATCGCCGGACTT
TTGATGATTGTCTCATGGTCATCTTTCATTTATGCGCTAACCCATCATCTGGTACTTGATGCCAGCCTCGGCTATTTTAT
CAACCCGCTATTTGTTATTGCGCTGGGATGCATTTTTCTTAAAGAAAAACTGTCGTTGTTTCAGGCCATCGCCGTTTTTT
CTGGTGTCTGTGGCCTGACTTTTCAAATTATCATGCTACGGCATTTCCCGGCGCTGGCGCTAACCATGGGATTATCATTT
GCGCTATATGGCCTGGCGCGAAAGTTTATACATTATGATGTGATGACATCGATAACGATTGAAACATTATGGGCATTGCC
TGTCTCACTATTAATTTTTCTCTTTAGCGATACTGGACCAATTATATCCGCTAATACTCCTTTCTTTTTGTATGTCATGA
CGGCGCCAGTGACGATCATTCCACTGGTATTATTTGCCATCGCGTTAAATCACACCTCGTTGATTGTCACCGGACTGGCG
CAATATATAGAGCCGTCTTTACAGTTCTTACTTGCCATTATGATATTTGGCGAGCACATTAATTACGCGGAACTGCTCTG
CTTTTGTGCAGTATGGTTCGGGCTGTTTCTATGCATATCTGAAAATTTATATTCCCATTATCTCCGCGCCCGTCTGAAAC
CGGTGTTCGGCAGGGTACAGCGCTTCTTTCGCTAA

Upstream 100 bases:

>100_bases
GCGTGAAGATTTTAGAGTAAATAAAACCACTCGATGTAGCGTAGCAGGAGAACTGGAAAATTCATACGCATCGGGTGAAG
TTATAACAGGATATGGATAA

Downstream 100 bases:

>100_bases
CAAAGGGCGCAGGGCCGGATACGCGTCTGCGTGACACTCCGCCCCGTCCTTTTATTCTTGTCGCGCCGCTTTAGCCATGA
TCTTCTTCAGCGCATGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MEKYLRSGTMFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVRLLFRQRTRFHDAWKDKKSFFFCMIAGL
LMIVSWSSFIYALTHHLVLDASLGYFINPLFVIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSF
ALYGLARKFIHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAIALNHTSLIVTGLA
QYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYSHYLRARLKPVFGRVQRFFR

Sequences:

>Translated_304_residues
MEKYLRSGTMFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVRLLFRQRTRFHDAWKDKKSFFFCMIAGL
LMIVSWSSFIYALTHHLVLDASLGYFINPLFVIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSF
ALYGLARKFIHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAIALNHTSLIVTGLA
QYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYSHYLRARLKPVFGRVQRFFR
>Mature_304_residues
MEKYLRSGTMFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVRLLFRQRTRFHDAWKDKKSFFFCMIAGL
LMIVSWSSFIYALTHHLVLDASLGYFINPLFVIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSF
ALYGLARKFIHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAIALNHTSLIVTGLA
QYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYSHYLRARLKPVFGRVQRFFR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=32.6388888888889, Blast_Score=161, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34819; Mature: 34819

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKYLRSGTMFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVRLLFRQRT
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFHDAWKDKKSFFFCMIAGLLMIVSWSSFIYALTHHLVLDASLGYFINPLFVIALGCIFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSFALYGLARKFIHYDVMTSITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAIALNHTSLIVTGLA
HHHHHHHHHHHHHHHCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYSHYLRARLKPVFGRVQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFFR
HHCC
>Mature Secondary Structure
MEKYLRSGTMFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVRLLFRQRT
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFHDAWKDKKSFFFCMIAGLLMIVSWSSFIYALTHHLVLDASLGYFINPLFVIALGCIFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSFALYGLARKFIHYDVMTSITI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAIALNHTSLIVTGLA
HHHHHHHHHHHHHHHCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYSHYLRARLKPVFGRVQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFFR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]