Click here to switch to the map view.

The map label for this gene is yafD [C]

Identifier: 29142981

GI number: 29142981

Start: 2683237

End: 2684016

Strand: Reverse

Name: yafD [C]

Synonym: t2607

Alternate gene names: 29142981

Gene position: 2684016-2683237 (Counterclockwise)

Preceding gene: 29142982

Following gene: 29142980

Centisome position: 56.01

GC content: 53.33

Gene sequence:

>780_bases
ATGCGCTATGTTGCCGGACAGCCCGCCGAGCGGATTTTGCCGCTAGGGTCGTTTGCGAGCATTGGCCAGGCATTGCCCGC
CGGGGAACCGCTAAGCAGTGAAGAGCGGATCCGTATCCTCGTGTGGAATATATTCAAGCAGCAGCGAGCCGAATGGTTAT
CGGTGCTGAAGAACTACGGCAAAGATGCGCATCTGGTCCTGTTGCAGGAGGCCCAGACGACGCCTGAACTGGTACAGTTT
GCCACCGCTAACTATCTTGCCGCCGATCAGGTTCCCGCTTTTGTATTACCTCAGCACCCGTCTGGCGTTATGACGCTTTC
TGCCGCCCATCCTGTTTACTGCTGCCCTTTACGGGAAAGAGAACCAATTTTACGTTTGGCGAAATCAGCCCTGGTGACGG
TATATCCCTTGCCGGATACCCGTTTATTAATGGTAGTAAATGTTCATGCGGTAAATTTTAGTCTGGGCGTGGACGTATAC
AGTAAGCAGTTACTTCCGATCGGCGACCAGATTGCGCACCATAGCGGCCCTGTCATTATGGCGGGTGATTTTAATGCCTG
GAGCCGCCCACGTATGAATGCGTTGTACCGCTTTGCACGTGAGATGTCGCTGCGCCAGGTGCGTTTCACTGACGATCAAC
GCCGTCGTGCGTTTGGACGACCGCTGGATTTTGTTTTTTATCGTGGTTTAAACGTGAATGAAGCCTCCGTACTGGTGACG
CGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAACCTGAGCAATAA

Upstream 100 bases:

>100_bases
GTGAGTGCTAAAATCCCTATAACAGAAGAACCAGTCCGGTTGAGGACTGGTTGACGTTACAGAGGTTTGAAAGTCAAAAG
TGCGAAAAAACACCTATGCG

Downstream 100 bases:

>100_bases
AGGTGAGTCAGGTCTGCCGTGGGGCAGGCCTCTGCGGGTGCTGCCCTCTATTTTTCTCATAACAGAAGGGCACTACCATG
ACAACGCATTCCCACCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQF
ATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVT
RASDHNPLLVEFSPGKPEQ

Sequences:

>Translated_259_residues
MRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQF
ATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVT
RASDHNPLLVEFSPGKPEQ
>Mature_259_residues
MRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQF
ATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVT
RASDHNPLLVEFSPGKPEQ

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=259, Percent_Identity=96.5250965250965, Blast_Score=516, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 29055; Mature: 29055

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYG
CCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
KDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLRER
CCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEEECCCCCC
EPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM
CHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHHCCCCEEE
AGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVT
EECCCCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCEEEEE
RASDHNPLLVEFSPGKPEQ
ECCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYG
CCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
KDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLRER
CCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEEECCCCCC
EPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM
CHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHHCCCCEEE
AGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVT
EECCCCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCEEEEE
RASDHNPLLVEFSPGKPEQ
ECCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA