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The map label for this gene is ytbD [H]

Identifier: 29142982

GI number: 29142982

Start: 2684169

End: 2685344

Strand: Reverse

Name: ytbD [H]

Synonym: t2608

Alternate gene names: 29142982

Gene position: 2685344-2684169 (Counterclockwise)

Preceding gene: 29142984

Following gene: 29142981

Centisome position: 56.04

GC content: 55.7

Gene sequence:

>1176_bases
ATGCCTCTCGCTTTATTTGCACTGACAATAAGTGCCTTCGCTATTGGCACGACTGAGTTCGTGATTGTCGGCCTGGTGCC
GACCATTGCACAACAACTGGCTGTCTCGTTACCTTCTGCCGGAATGCTGGTTTTAATCTATGCACTGGGTGTGGCTATTG
GCGCGCCGGTGCTAACCGCTCTGACCGGACGCCTGCCGCGTAAACAGTTACTGGTCGCGCTGATGGTCTTGTTTACGGCG
GGGAATTTGCTGGCGTGGCAGGCTCCGGGCTATATGACATTAATCGCCGCCCGTCTGCTGACGGGCCTGGCGCACGGCGT
GTTCTTCTCGATTGGCTCTACCATCGCGACAAGTCTGGTGCCGAAAGAGAAAGCGGCTTCTGCTATCGCTATTATGTTTG
GTGGTTTAACAGTAGCGCTGGTAACAGGTGTTCCGCTGGGGACATTTATCGGTCAGCATTTTGGCTGGCGTGAGACCTTC
CTTGCGGTATCACTGTTAGGCGTGATTGCGCTGATGAGCAGTCAACTGCTGATCCCTGCCAATATTCCTGGTCGGGCGGC
CGCCAGCATTCGTGACCAGGTGAAAGTACTGACTCATCCTCGTCTGCTGCTGATTTACGCCGTTACGGCGCTGGGCTACG
GCGGGGTATTCACGGCATTCACCTTCCTGGCGCCGATGATGCAGGATCTGGCGGGATTCTCTCCGGCAGCAGTAAGCTGG
ATCCTACTGGGTTATGGCGTATCAGTGGCTATCGGCAATATCTGGGGCGGTAAACTGGCGGATAAGCATGGTGCCGTGCC
GGCTCTGAAATTCATTTTCGCCGCGCTGTTTGTTCTGCTGATGGTCTTCCAGGTGACGGCCTCCACGCAGTATGCCGCGC
TGGCTACCATTCTGGTGATGGGGATCTTTGCCTTCGGTAACGTACCGGGGTTGCAGGTCTACGTGGTACAGAAAGCGGAA
CAATTCACGCCTAATGCCGTTGATGTGGCGTCAGGTCTGAACATTGCGGCGTTTAACATTGGTATTGCGCTGGGTTCCGT
GATTGGCGGACAAACGGTGGCGCATTACGGTTTGGCGCAGACGCCGTGGATTGGCGCCCTCATTGTTCTGGTGGCTTTTC
TGCTGATGGGCGTCAGCGGACGTCTTGATAAACCTGTGCGCATTGCTCTGGAGTAA

Upstream 100 bases:

>100_bases
GCTCCTGCAGCAAAATTAAATTTATATTTTGGCTATTTTTGTCATTAAAACATCCTGGCATACTGCGTGTCATCTGATTA
CTGCTGTTATGGAGTTATGT

Downstream 100 bases:

>100_bases
ATTATTGATGTAAGCGCCTACTTACAAAACAAACTGCAATTGTTCGTTGAAAGTGAGTGCTAAAATCCCTATAACAGAAG
AACCAGTCCGGTTGAGGACT

Product: drug efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVLIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTA
GNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Sequences:

>Translated_391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVLIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTA
GNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE
>Mature_390_residues
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVLIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAG
NLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFL
AVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSWI
LLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAEQ
FTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=378, Percent_Identity=41.7989417989418, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1786595, Length=352, Percent_Identity=30.9659090909091, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787808, Length=366, Percent_Identity=29.5081967213115, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI145693198, Length=387, Percent_Identity=24.5478036175711, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40569; Mature: 40438

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVLIYALGVAIGAPVLTA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
>Mature Secondary Structure 
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVLIYALGVAIGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]