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The map label for this gene is tcfD [H]

Identifier: 29142929

GI number: 29142929

Start: 2624115

End: 2625194

Strand: Reverse

Name: tcfD [H]

Synonym: t2547

Alternate gene names: 29142929

Gene position: 2625194-2624115 (Counterclockwise)

Preceding gene: 29142930

Following gene: 29142928

Centisome position: 54.78

GC content: 47.41

Gene sequence:

>1080_bases
ATGAGTAATAAAATGAAGTGGACGAGTATGACAGCCCATTGGTCAGCAATTATTAATTTCATCCGAAAATATGTTTATCC
AGCAAGGATAATTGCCATCCTGCTGATGGCTGGCGCTACACTGCCACAAGTCGCCGATGCGATTACCGTCGACCTGAATT
ACGACAAGAACAATGTAGCGGTCATCACTCCTGTCTGGTCCCAAGAATGGAGTGTAGCAAATGTGTTGGGGGGATGGGTA
TGTCGTTCAAACAGGAATGAAAATGAGGGGGCGTGTGAAGAAACACATTTGGTATGGTGGTATGCTTTTGGAGCTTATTC
AAAAATTCGTCTGCGTTTCAGAGAACAAATCAGCCATGCTGAAATCACGCTCATACTGCTCGGCAGTGTTCGTGATGCCT
GTTATACTGGTGTCATCAACATGAACGCTGCTGCATGTCAATGGGGTAGGTCGCTGAAACTTAGGATACCTTCAGAAGAG
CTTGCGAAGATACCTACAAGCGGAACATGGAAAGCAACGTTAGTCCTGGATTATTTACAATGGGGCGGAGACGATCCTTT
AGGCACATCAACTACAGATATCACGCTGAATGTAACAGACCACTTTGCTGAAAATGCGGCTATTTACTTTCCGCAATTTG
GTACAGCAACGCCCCGGGTGGACCTGAATCTTCACCGGATGAATGCCTCACAAATGTCGGGCAGGGCTAATCTGGATATG
TGTCTGTATGACGGAGGTGTGAAAGCCCGTTCATTACAGATGAAGATAGAAGGAAGCAATAAGTCAGGTACGGGATTTCA
GGTTATAAAGAGCGATTCTGCTGATACGATTGATTATGCGGTCAGTATGAATTATGGGGGACGAAGTATTCCTGTCACCC
GTGGCGTGGAGTTCAGTCTGGATAACGTGGATAAAGCAGCAACGCGTCCGGTGGTACTTCCCGGGCAACGGCAGGCGGTA
CGTTGTGTGCCAGTGCCCCTTACCCTGACAACACAACCCTTTAACATCAGAGAGAAGCGTTCTGGTGAGTATCAGGGAAC
GCTGACAGTGACAATGCTGATGGGAACACAAACCCCCTGA

Upstream 100 bases:

>100_bases
GCGTTGCAAATATCGCCGCGGGTCATCCGTTTGCTGAACGTGGCAGGTTTGCTGCGCCATTCCGTTCAGGAAGCCTGACG
TAGAGATAAAGGCGTTAACT

Downstream 100 bases:

>100_bases
CAGTAATTATTTATTTTATTGATATCTTTCTTATATGGTTTTTTAAATCAGAGTTCTCTTTATATACTTGTTTTATTTAA
TAAAGAGAATCTATTCACTT

Product: fimbrial protein

Products: NA

Alternate protein names: Colonization factor antigen I subunit E [H]

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MSNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQVADAITVDLNYDKNNVAVITPVWSQEWSVANVLGGWV
CRSNRNENEGACEETHLVWWYAFGAYSKIRLRFREQISHAEITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEE
LAKIPTSGTWKATLVLDYLQWGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATPRVDLNLHRMNASQMSGRANLDM
CLYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADTIDYAVSMNYGGRSIPVTRGVEFSLDNVDKAATRPVVLPGQRQAV
RCVPVPLTLTTQPFNIREKRSGEYQGTLTVTMLMGTQTP

Sequences:

>Translated_359_residues
MSNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQVADAITVDLNYDKNNVAVITPVWSQEWSVANVLGGWV
CRSNRNENEGACEETHLVWWYAFGAYSKIRLRFREQISHAEITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEE
LAKIPTSGTWKATLVLDYLQWGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATPRVDLNLHRMNASQMSGRANLDM
CLYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADTIDYAVSMNYGGRSIPVTRGVEFSLDNVDKAATRPVVLPGQRQAV
RCVPVPLTLTTQPFNIREKRSGEYQGTLTVTMLMGTQTP
>Mature_358_residues
SNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQVADAITVDLNYDKNNVAVITPVWSQEWSVANVLGGWVC
RSNRNENEGACEETHLVWWYAFGAYSKIRLRFREQISHAEITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEEL
AKIPTSGTWKATLVLDYLQWGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATPRVDLNLHRMNASQMSGRANLDMC
LYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADTIDYAVSMNYGGRSIPVTRGVEFSLDNVDKAATRPVVLPGQRQAVR
CVPVPLTLTTQPFNIREKRSGEYQGTLTVTMLMGTQTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010888 [H]

Pfam domain/function: PF07434 CblD [H]

EC number: NA

Molecular weight: Translated: 39742; Mature: 39611

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQVADAITVDLNYDKNNVA
CCCCEEEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCCEE
VITPVWSQEWSVANVLGGWVCRSNRNENEGACEETHLVWWYAFGAYSKIRLRFREQISHA
EEEECCCCCCCHHHHHHCEEECCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCC
EITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEELAKIPTSGTWKATLVLDYLQ
EEEEEEECCCCCHHHCCEEECCHHHHHCCCEEEEECCHHHHHCCCCCCCEEEEEEEEHHH
WGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATPRVDLNLHRMNASQMSGRANLDM
CCCCCCCCCCCEEEEEEEHHHCCCCEEEEECCCCCCCCEEEEEEEECCHHHHCCCCCEEE
CLYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADTIDYAVSMNYGGRSIPVTRGVEFSL
EEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEECCCEEEC
DNVDKAATRPVVLPGQRQAVRCVPVPLTLTTQPFNIREKRSGEYQGTLTVTMLMGTQTP
CCCCHHHCCCEEECCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCEEEEEEEEEECCCC
>Mature Secondary Structure 
SNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQVADAITVDLNYDKNNVA
CCCEEEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHCCCEEEEEEECCCCCEE
VITPVWSQEWSVANVLGGWVCRSNRNENEGACEETHLVWWYAFGAYSKIRLRFREQISHA
EEEECCCCCCCHHHHHHCEEECCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCC
EITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEELAKIPTSGTWKATLVLDYLQ
EEEEEEECCCCCHHHCCEEECCHHHHHCCCEEEEECCHHHHHCCCCCCCEEEEEEEEHHH
WGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATPRVDLNLHRMNASQMSGRANLDM
CCCCCCCCCCCEEEEEEEHHHCCCCEEEEECCCCCCCCEEEEEEEECCHHHHCCCCCEEE
CLYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADTIDYAVSMNYGGRSIPVTRGVEFSL
EEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEECCCEEEC
DNVDKAATRPVVLPGQRQAVRCVPVPLTLTTQPFNIREKRSGEYQGTLTVTMLMGTQTP
CCCCHHHCCCEEECCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2569152; 1352712 [H]