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The map label for this gene is tinR [H]

Identifier: 29142928

GI number: 29142928

Start: 2623527

End: 2623982

Strand: Reverse

Name: tinR [H]

Synonym: t2546

Alternate gene names: 29142928

Gene position: 2623982-2623527 (Counterclockwise)

Preceding gene: 29142929

Following gene: 29142927

Centisome position: 54.76

GC content: 31.58

Gene sequence:

>456_bases
ATGACTGTGTATTTAGATGATAAAGATAAAGAATTATTGAAAGAAATCCAAAAAGATTGTGCACAAACTTTATGGCAACT
TGCATATAAAGTGGGACTTACGCCCACACCATGTTTCAAACGTTTAAAAAAACTTAAAGACAGGGGGGTTATCATTGGTC
AGTTCGCTTTATTGGATAAAGAAAAACTAGGTCTTTCACTTAATGTCTTTATTATGATTAACATATCTGAGGAGCAATAC
GCTAGTATTTCTGAGAAAATAAAGTCAATGCCTGAGGTTATTGCCTTTTATCGAATTTCTGGATCATTTAATTATTTAAT
GCATACAGTATTTACAGATATGAACGATTACTATAGTTTTTATGAGAAAATAATATTAACTAATTCTTCAATTAGTGGAT
CTGCATCGAGCTTTGTTCTTGAGCAAATAAAGGAAACAAACGAACTGCCAGTGTGA

Upstream 100 bases:

>100_bases
ATATGGTTTTTTAAATCAGAGTTCTCTTTATATACTTGTTTTATTTAATAAAGAGAATCTATTCACTTATGAAAATCAAT
GCGTGAGGTTCTGCTTTCCT

Downstream 100 bases:

>100_bases
AAGTGTGATGTGTACTTACTGATTTAATACATTATTATCCTTCTTACGGAACAACAACGGCAGATTGCGGCTGTTGAACA
AGGATTTTAATCAGCAGTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQY
ASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV

Sequences:

>Translated_151_residues
MTVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQY
ASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV
>Mature_150_residues
TVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQYA
SISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=44, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=32.4503311258278, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17358; Mature: 17227

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDK
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEHHHHHHH
EKLGLSLNVFIMINISEEQYASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSF
HHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
YEKIILTNSSISGSASSFVLEQIKETNELPV
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDK
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEHHHHHHH
EKLGLSLNVFIMINISEEQYASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSF
HHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
YEKIILTNSSISGSASSFVLEQIKETNELPV
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]