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The map label for this gene is pchR [H]

Identifier: 29142887

GI number: 29142887

Start: 2577020

End: 2578024

Strand: Reverse

Name: pchR [H]

Synonym: t2501

Alternate gene names: 29142887

Gene position: 2578024-2577020 (Counterclockwise)

Preceding gene: 29142888

Following gene: 29142886

Centisome position: 53.8

GC content: 58.21

Gene sequence:

>1005_bases
ATGTCTCCGATCTCCTGTCACTCTTCCGCCGCCCCGGCGATGAAAAAGATCTTTTCCGTCAGCGACTTCATCGCGTTTGG
CGAGCGTTATGGCATTGATTACCGCTTCCCTGCGTTACCGCAGTATACGCAGAGTAGTCCCGTACTTCATGGCGATATCG
AAGAGATAGCGCTTCCCGGCGGGATTTGCATTACACGCTCGGATGTTCACGTGTTACAACCTTATGAAACCACCTCTCGC
CATAGCAGTCCGCTGTATATGCTGGTGGTGTTGGAAGGTAACGTCGCGCTGGCTGTCAATGAGCAGACCTTTTTGTTGAG
CGCGGGGATGGCGTTTTGCTCGCAACTGAGTGAGCAGCAGACGATACGCGCCCATCACGGCGCAGACAGTAAATTGCGCA
CCTTATCGCTGGGAATGTACCCGGACGGCGGGTGGCGGGAGCGTTTGCCTGTCTCGCTGGCAGACGAGTGGGAACGTAGC
GCGGCCTCGGCGAGGGTCTGGCAGGTGCCGGAGTTTCTGCTTTCGGGGCTACGTTATGCGCAGCAGCCCGGACCTCATGC
GGCGTCACGCCAGTTAATGCTGGAAGGCATCATGCTGCAATTGCTGGGCTATGCGTTAAATCTATGTCAGCCCGCAACGC
AAAAACGCGGACTTCCCGTCACCGGTGAATACCAGCGGCTGGAGCTCATTCGGCGTTTACTGGAGCAAACGCCGGAAAAA
GCCTACACGCTGAACGAACTGGCGCGTCGGGCGGCAATGAGTCCGAGTAGCCTGCGGTGCAAGTTTCGCCATGCCTATGG
GTGTACCGTGTTTGATTATCTGCGCGATTGCCGCCTGGCGCGCGCGCGTCGTTATCTGATGGAGGGATACAGCGTGCAGC
AGGCCGCCTGGATGTCAGGCTATCAACATGCCACTAACTTTGCGACGGCATTTCGTCGGCGTTATGGCTGCTCGCCCGGC
GAGCTGCGTGACGCGTCTCTGACGGCGTCCCGCCACTGTGCGTAA

Upstream 100 bases:

>100_bases
GTTGATAATTATTCTCATCTTTATTGTCGTTCCCGGGCCGCAGTGATATGGTTACACAGTGGCTAACGCTCTGGTATAAC
GCAGATAAACGGTATTGATA

Downstream 100 bases:

>100_bases
CGCGCCCCGCCAGAGCGGTAATATCCGCCGCTAACCCGGTTTTCTGCCGCTTTGGGTGATTTTTTATCATTGCGCATAGG
CAATCTGGCGTTACGCATAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSR
HSSPLYMLVVLEGNVALAVNEQTFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERS
AASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEK
AYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPG
ELRDASLTASRHCA

Sequences:

>Translated_334_residues
MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSR
HSSPLYMLVVLEGNVALAVNEQTFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERS
AASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEK
AYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPG
ELRDASLTASRHCA
>Mature_333_residues
SPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSRH
SSPLYMLVVLEGNVALAVNEQTFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERSA
ASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEKA
YTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPGE
LRDASLTASRHCA

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37405; Mature: 37274

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLHGDIEEIALPG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHCCCC
GICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQTFLLSAGMAFCSQLSEQQ
CEEEEECCCEEECCCCCCCCCCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHH
TIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERSAASARVWQVPEFLLSGLRYA
HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCHH
AYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSG
HHHHHHHHHHHHCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YQHATNFATAFRRRYGCSPGELRDASLTASRHCA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
SPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLHGDIEEIALPG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHCCCC
GICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQTFLLSAGMAFCSQLSEQQ
CEEEEECCCEEECCCCCCCCCCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHH
TIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERSAASARVWQVPEFLLSGLRYA
HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCHH
AYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSG
HHHHHHHHHHHHCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YQHATNFATAFRRRYGCSPGELRDASLTASRHCA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]