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The map label for this gene is fimF [H]

Identifier: 29142707

GI number: 29142707

Start: 2378933

End: 2379451

Strand: Reverse

Name: fimF [H]

Synonym: t2315

Alternate gene names: 29142707

Gene position: 2379451-2378933 (Counterclockwise)

Preceding gene: 29142708

Following gene: 29142697

Centisome position: 49.66

GC content: 54.34

Gene sequence:

>519_bases
ATGATTCTTCGGCGCGTTTTCATCGCTATCGGTTGTGTTTTGTTAAGCCCGCTGAGTCAGGCCAACTCATCTCTGGGCGA
AGTGAATATTGAACTGCGCGGTAACGTGGTGGATTTTACCTGCGCCGTGGTTGCGGGCGACAGTAACAAGTCGGTTAACC
TCGGCACCTGGCCGACAAAACAGCTTCACGTCGCCGGGGACGCTACGCAACCGGTAGCCTTTAGCCTAAAACTTGAAGGC
TGCCCGCCAGGTTCGGCGTCTATAACGTTTTCCGGGACGCCAGCGCCCGGCACGGCATTACTGGCGCTTGCTGATACGGC
AATGGCGCAAAAACTGGCGATTGAAATTCGCGATGGCGATCAACGTCGATTGCCACTTGAACAGGCCAGCAAGGCCGTCG
ATATTGACAACAACGGCAATGCTACCCTGAAATTCTATGCGAACTATATCGCCTTAGCCGATGGCGTGCAGCCCGGTCTT
GCTAACGCGGATGCGACCTTCCTGATCAATTACAATTAG

Upstream 100 bases:

>100_bases
TATTCGCGCCTGGCCGATCAGCGTGACGGGGAATAAACCGGCGGAAGGGCCGTTTACTGCGCGCGGCTATCTACGAGTCG
ATTATGATTAAGGAGGCATA

Downstream 100 bases:

>100_bases
TGTCCGTTATTTTGGCTCCCGAACGATAATTCGCCGGGAGTACATTTACAATAATTCGTGTGATTTGGCGTAATCGATAA
GCTCAACGATAGAGTGAAGG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHVAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN

Sequences:

>Translated_172_residues
MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHVAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN
>Mature_172_residues
MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTKQLHVAGDATQPVAFSLKLEG
CPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
ANADATFLINYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786746, Length=171, Percent_Identity=57.8947368421053, Blast_Score=191, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17987; Mature: 17987

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTK
CHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCC
QLHVAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGD
EEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCC
QRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGLANADATFLINYN
CCCCCHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVVAGDSNKSVNLGTWPTK
CHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEECCEEEEEEEEEECCCCCEEEECCCCCC
QLHVAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLALADTAMAQKLAIEIRDGD
EEEEECCCCCCEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCC
QRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGLANADATFLINYN
CCCCCHHHCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]