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The map label for this gene is fimZ [H]

Identifier: 29142706

GI number: 29142706

Start: 2378255

End: 2378887

Strand: Direct

Name: fimZ [H]

Synonym: t2314

Alternate gene names: 29142706

Gene position: 2378255-2378887 (Clockwise)

Preceding gene: 29142705

Following gene: 29142713

Centisome position: 49.63

GC content: 40.76

Gene sequence:

>633_bases
ATGAAACCTGCATCTGTTATCATTATGGACGAACACCCTATTGTAAGAATGTCGATCGAAGTTTTACTCGGTAAAAATAG
CAATATTCAGGTTGTCCTGAAAACGGATGATAGCCGAACAGCGATAGAGTATCTGCGCACTTATCCTGTTGATCTTGTCA
TTCTGGATATTGAATTACCGGGCACCGACGGCTTTACCTTACTTAAACGAATCAAATCTATCCAGGAACATACCCGGATA
CTTTTTTTATCGTCGAAATCAGAGGCTTTTTATGCCGGAAGAGCAATAAGAGCGGGCGCAAACGGATTTGTAAGTAAACG
CAAAGACCTCAATGATATTTATAATGCGGTAAAAATAATTTTATCCGGCTATTCTTTTTTTCCATCTGAGACGCTTAACT
TTATCAGTAATACCCGTCCCCCCAAAGGCGGGCACCATGATATGCCACTTTCTAACCGCGAAGTTACCGTGCTGCGCTAT
CTGGCCAATGGAATGTCTAACAAAGAAATTGCCGAGCAACTTTTATTGAGTAACAAGACTATCAGCGCGCATAAGGCCAA
TATATTTTCTAAACTTGGCCTTCACTCTATCGTTGAGCTTATCGATTACGCCAAATCACACGAATTATTGTAA

Upstream 100 bases:

>100_bases
CTCCACCGTGTGGTGTGTAGATCTGGCTATTTCACAATCTTTAAGGTGTCTGACGCTTATTCTAAAACGAAGGACGCATA
ACAGTCTGAGGCATACAACA

Downstream 100 bases:

>100_bases
ATGTACTCCCGGCGAATTATCGTTCGGGAGCCAAAATAACGGACACTAATTGTAATTGATCAGGAAGGTCGCATCCGCGT
TAGCAAGACCGGGCTGCACG

Product: transcriptional regulator FimZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL

Sequences:

>Translated_210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL
>Mature_210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=210, Percent_Identity=71.4285714285714, Blast_Score=315, Evalue=2e-87,
Organism=Escherichia coli, GI1788712, Length=205, Percent_Identity=32.1951219512195, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=29.8076923076923, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=34.5177664974619, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=31.5, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788546, Length=212, Percent_Identity=31.1320754716981, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787473, Length=187, Percent_Identity=26.2032085561497, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23525; Mature: 23525

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELP
CCCCEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCEEEEEEEEEEC
GTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKII
CCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRYLANGMSNKEIAEQLLLSNKT
HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
ISAHKANIFSKLGLHSIVELIDYAKSHELL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELP
CCCCEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCEEEEEEEEEEC
GTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKII
CCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRYLANGMSNKEIAEQLLLSNKT
HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
ISAHKANIFSKLGLHSIVELIDYAKSHELL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]