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The map label for this gene is fimY [H]

Identifier: 29142705

GI number: 29142705

Start: 2376929

End: 2377651

Strand: Direct

Name: fimY [H]

Synonym: t2313

Alternate gene names: 29142705

Gene position: 2376929-2377651 (Clockwise)

Preceding gene: 29142704

Following gene: 29142706

Centisome position: 49.6

GC content: 46.47

Gene sequence:

>723_bases
ATGCGCAGCGTACCATGCAGGGAAAGACACCGCCGTTTAAGAAATGCCAAAGACTGCGCCTGCCGTTATCACTCTCCAAC
GCCGCAGATATTTGATCGCCTTGAGTTACTGAACCAACAGCTAAATTATGCCTTGCCGGTTGGTATCATTTCTCAGGCAA
TAATTACAACTGATAACTACCTCGGCTATTCATTGAGTCACTACTTATTTTCCGGAAAACGTACCGCAGCATTCCGCTCA
TTAGATGACATTTCTTTGTGGATTGAAAAGGGGTCGCTCAGACAACTGATTGTAGATATGGAGACGCTACCTGTCTCCTG
TATTGAGGCGCTTAACCAGCTACACGCGCTCAGTTGGCAACAAAGCGATATCCAGATTTACCTGCTGGTATCAGATAAAA
CCCCCGCTATAGCTCAGTTTATCCGTATGGCTGGGCGTTTTTTTGTCCTGTCGCGACGACAAAATCTGGCCTCTGTACGC
GAAGCCTTGTTATCAGCCGCCGAACCTCGCTTATCGGAAAGCTTTAGCCGTACTGACTGGTTGATGATTGAAACTTTAGC
GCAAGGTGCCTCTTTAAAAGAAATAGCACGTCAGCAAAGCGTACCTTATCATCGTGTGGTTTACCGGCTTAAACAACTTA
TCACCCTCCTTAACCTTCCCCACAGGCAAAGCTTTCTTCGGCTGATCCAGCAGCTAAACGTTACTTTCCACGACATTTTT
TAA

Upstream 100 bases:

>100_bases
GCAACGAGGCATTGCTTTTTACGCTGGTGCAACGATGGGACAAGGTTATTTATGGCCAGCCATATTACCAGATATATATT
AGAGCAATGGAAAAAGCAGG

Downstream 100 bases:

>100_bases
CGAAGTAACGTTTTGGTGAATAAGATTTTTTAAGAAATTACTTATTTTCACTGCCATTAAATGTAAATATTTCACATAAA
ATTAATATTTACAACTCGTC

Product: fimbriae Y protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLHALSWQQSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVR
EALLSAAEPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Sequences:

>Translated_240_residues
MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLHALSWQQSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVR
EALLSAAEPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
>Mature_240_residues
MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLHALSWQQSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVR
EALLSAAEPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27785; Mature: 27785

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLHALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVREALLSAAEPRLSESFSRTDW
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMETLPVSCIEALNQLHALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVREALLSAAEPRLSESFSRTDW
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]