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The map label for this gene is ybfE [H]

Identifier: 29142588

GI number: 29142588

Start: 2246983

End: 2247276

Strand: Direct

Name: ybfE [H]

Synonym: t2180

Alternate gene names: 29142588

Gene position: 2246983-2247276 (Clockwise)

Preceding gene: 29142587

Following gene: 29142589

Centisome position: 46.89

GC content: 52.72

Gene sequence:

>294_bases
ATGGCCAAAGAACAAACGGACCGTACGACATTAGATCTGTTCGCGCACGAGCGTCGCCCGGGACGACCTAAAACGAATCC
GCTTTCGCGCGATGAACAGTTACGCATCAACAAGCGCAACCAGTTAAAACGCGACAAAGTTCGTGGCCTCAAGCGTGTCG
AATTAAAACTCAACGCACAAGCGGTTGACGCGCTGAATGAGCTGGCCGAAGCGCGCAACATTAGCCGCAGCGAGCTCATT
GAAGAAATATTAATGAAGCAGCTTATGGCGCTGCGCGGCCAGGGTTTAGTCTGA

Upstream 100 bases:

>100_bases
GCGCGCGAGCGTTGGCGTCGCTTCCTCGCTGATGTATGATGGCGCGCTATCCATCCGGGCATAAGCCTGGCTGATTGTTT
CCCCCGAAGTCACCAAAATC

Downstream 100 bases:

>100_bases
AAATAAGTTTTGTTTCATATTTCGTGTAGCAGAGCGTGCAGTCCCGCGTGATTGCTGTTTCCGCATATCTGCCTGTTCTG
CTATGATTGCCCTTATCCGT

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQAVDALNELAEARNISRSELI
EEILMKQLMALRGQGLV

Sequences:

>Translated_97_residues
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQAVDALNELAEARNISRSELI
EEILMKQLMALRGQGLV
>Mature_96_residues
AKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQAVDALNELAEARNISRSELIE
EILMKQLMALRGQGLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=97, Percent_Identity=90.7216494845361, Blast_Score=177, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 11243; Mature: 11112

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQ
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
AVDALNELAEARNISRSELIEEILMKQLMALRGQGLV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQ
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
AVDALNELAEARNISRSELIEEILMKQLMALRGQGLV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]