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The map label for this gene is ybjS [H]

Identifier: 29142422

GI number: 29142422

Start: 2061850

End: 2062863

Strand: Direct

Name: ybjS [H]

Synonym: t2001

Alternate gene names: 29142422

Gene position: 2061850-2062863 (Clockwise)

Preceding gene: 29142421

Following gene: 29142425

Centisome position: 43.03

GC content: 54.83

Gene sequence:

>1014_bases
ATGAAGGTACTGGTTACCGGCGCCACCAGCGGCTTAGGTCGAAACGCGGTTGAATTTTTGCGCAATAAAGGCATCAGCGT
CAGAGCGACGGGTCGCAATGAAGCGATGGGCAAGCTGCTTGAAAAAATGGGCGCGGAATTCGTCCATGCGGATTTAACCG
AACTGGTCTCCTCGCAGGCTAAAGTGATGCTTGCCGGGATCGACACGTTGTGGCACTGCTCCAGCTTTACCTCGCCCTGG
GGAACCCAACAGGCTTTCGATCTGGCGAATGTTCGCGCCACCCGCCGTCTGGGAGAATGGGCGGTCGCCTGGGGCGTGCG
CAATTTTATTCATATCTCCTCTCCCTCGCTCTATTTTGATTACCACCATCACCGTGATATCAAAGAAGATTTCCGCCCGC
ATCGGTTTGCCAATGAGTTCGCCCGCAGTAAAGCCGCCGGCGAAGAGGTGATTAATCTGTTGGCGCAGGCCAATCCGCAA
ACACGTTTTACGGTATTGCGTCCACAAAGCCTGTTTGGCCCGCACGATAAAGTATTTATCCCACGTCTGGCGCATATGAT
GCACCATTACGGTAGCGTCTTATTACCGCACGGGGGCAGCGCGCTGGTCGATATGACCTACTATGAAAATGCGATCCACG
CCATGTGGCTGGCCAGCCAGCCGGGCTGCGATCATCTGCCTTCTGGCCGCGCTTATAACATCACTAACGGCGAAAACCGC
ACCTTACGCAGCATCGTACAAAAGTTAATTGATGAATTGACTATCGACTGCCGCATTCGCTCTGTGCCTTACCCGATGCT
GGATATGATCGCCCGCAGTATGGAGCGCTTCGGCAAAAAATCCGCCAAAGAGCCCCCGCTAACGCATTACGGCGTGTCAA
AACTGAATTTTGATTTTACGCTCGATACGACTCGCGCGCAGGACGAGCTGGGCTACCAGCCCATCGTCACGCTGGACGAA
GGCATTGAGCGCACCGCCGCCTGGCTGCGCGATCACGGAAATTTACCGCGTTAA

Upstream 100 bases:

>100_bases
AATGAGAAAAAGTTGCTGTATTCTTTCGTGTTTCCCATTGCATACCGACGTAATTCACGGAAGAATGCGCACGACGGTTT
ATTAAACACAGTGGATTGAT

Downstream 100 bases:

>100_bases
TCCTGGCCGTACTTCTCCAGTAATGCTTCGGCAATCGCCTGCGTTTCGGCATCTGCGATACCGTTCCATTGCGCCGGACG
GAAGTGCATCTGGAACGCCA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPW
GTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ
TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENR
TLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDE
GIERTAAWLRDHGNLPR

Sequences:

>Translated_337_residues
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPW
GTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ
TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENR
TLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDE
GIERTAAWLRDHGNLPR
>Mature_337_residues
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPW
GTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ
TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENR
TLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDE
GIERTAAWLRDHGNLPR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=338, Percent_Identity=24.5562130177515, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI8393516, Length=338, Percent_Identity=24.5562130177515, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI239745448, Length=332, Percent_Identity=24.0963855421687, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI310132178, Length=332, Percent_Identity=24.0963855421687, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310113012, Length=332, Percent_Identity=24.0963855421687, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081792, Length=337, Percent_Identity=93.1750741839763, Blast_Score=667, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570557, Length=235, Percent_Identity=27.2340425531915, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=296, Percent_Identity=25.3378378378378, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37980; Mature: 37980

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQA
CEEEEECCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
KVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFD
EEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEE
YHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQTRFTVLRPQSLFGPHDKVFI
CHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHH
PRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENR
HHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCH
TLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFT
HHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEE
LDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGNLPR
ECCCCCHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMGAEFVHADLTELVSSQA
CEEEEECCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
KVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFD
EEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEE
YHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQTRFTVLRPQSLFGPHDKVFI
CHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHH
PRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLASQPGCDHLPSGRAYNITNGENR
HHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCH
TLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFT
HHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEE
LDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGNLPR
ECCCCCHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]