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The map label for this gene is yccS [H]

Identifier: 29142274

GI number: 29142274

Start: 1905932

End: 1908085

Strand: Direct

Name: yccS [H]

Synonym: t1847

Alternate gene names: 29142274

Gene position: 1905932-1908085 (Clockwise)

Preceding gene: 29142273

Following gene: 29142276

Centisome position: 39.77

GC content: 54.46

Gene sequence:

>2154_bases
ATGTTAAGTCCGTTGATTCGCCGTTATACCTGGAACAGTACCTGGCTGTATTACATCCGCATTTTTATCGCTCTGTGCGG
CACCACCGCCCTGCCCTGGTGGCTGGGCGACGTCAAACTGACCATCCCGCTCACGCTCGGTATGGTTGCCGCGGCGCTAA
CCGATCTCGACGACCGCCTTGCCGGACGCTTGCGTAATTTAATCATTACCTTAATTTGCTTTTTTATCGCGTCGGCTTCT
GTGGAGCTGCTCTTTCCCTGGCCGTGGCTATTTGCGTTGGGCTTAACGTTATCCACCAGCGGATTTATTCTGTTGGGAGG
ACTAGGGCAACGCTATGCCACCATCGCGTTCGGCGCGTTACTCATTGCGATTTATACGATGCTGGGCGCTTCTTTATACG
ATCACTGGTATCAGCAACCACTGCTCCTGCTGGCAGGCGCAGTATGGTATAACCTACTGACGCTAACCGGGCATCTGCTA
TTTCCGATCCGTCCGTTGCAGGATAATCTGGCACGCAGTTACGAACAGTTGGCGCACTATCTGGAACTGAAATCACGTCT
GTTTGATCCTGATATTGAAGATGAAAGCCAGGCGCCGCTCTATGATTTAGCGTTAGCGAACGGGCAGTTAATGGCGACGC
TGAACCAAACGAAAGTGTCGTTGTTGACTCGCCTGCGCGGCGATCGCGGTCAACGCGGTACGCGCCGCACTCTCCATTAC
TATTTTGTGGCGCAGGATATTCATGAACGCGCCAGTTCTTCGCATATTCAATACCAGACGCTGCGCGATTATTTTCGCCA
TAGCGACGTCATGTTCCGCTTTCAACGTCTGATGTCGATGCAGGCGCAGGCCTGTACGCAGCTGGCGCGCTGTATCTTAC
TGCGTACGCCGTACCAGCATGATCCGCGCTTTGAACGCGTCTTTACCCACATTGACGCCGCGCTTGAACGTATGCGCGCC
AGCGGCGCTTCTTTAGAGCTGCTGAATACGCTTGGATTCTTATTAACCAACCTACGCGCTATTGATGCGCAACTGGCGAC
GATCGAGTCGGAGCAGGCCCAGGCAATGCCGCGCAATGAGTCAGAAAACCAGTTGGCTGACGATAGCCTGCACGGGTTTA
GCGACATCTGGCTGCGTCTGAGCCGTAATTTTACCCCGGAGTCCGCTCTCTTTCGCCATGCGGTACGCATGTCGCTGGTA
TTGTGCATCGGTTATGCTCTCATCCAAATTACCGGGATGCGCCACGGGTACTGGATATTGCTCACCAGCCTGTTCGTTTG
TCAGCCTAACTATAACGCGACCCGCCATCGCCTTGCGCTCAGGATTATCGGTACGTTGGTAGGCGTTGCGATCGGCCTGC
CGATTTTATGGTTTGTCCCTTCGCTTGAAGGACAGTTAGTTCTGCTGGTGATTACCGGCGTGCTTTTCTTCGCATTCCGT
AATGTGCAGTATGCCCATGCGACGATGTTCATCACCCTGCTGGTATTACTCTGCTTTAACCTCCTGGGCGAAGGCTTCGA
GGTAGCGTTACCGCGCGTCATCGACACGTTAATTGGCTGCGCTATCGCCTGGGCTGCGGTCAGCTTTATTTGGCCGGACT
GGCGCTTTCGCAACCTTCCCCGGGTACTCCAGCGCGCCACCGATGCTAATTGCCGCTACCTTGATGCGATCCTTGAGCAA
TATCATCAGGGACGGGATAACCGCCTGGCCTATCGCATTGCCAGACGCGACGCGCACAACCGCGATGCAGAACTGGCATC
CGTGGTTTCTAATATGTCGAGCGAACCCGACGTCACGGCTGAAACCCGGGAGGCGGCGTTCAGGCTGCTTTGCCTCAATC
ACACTTTTACCAGCTATATCTCCGCCCTCGGCGCGCACCGCGAAAAGCTCAGCAATCCGGACGTGTTGGGGCTTCTGGAT
GACGCGGTCTGCTACGTTGATGATGCGCTTCATCATCAGCCAGAAGACGAACAGCGCGTACACCAGGCGCTGGAGGGTTT
AAAGCAGCGAGTTCAGTCGCTGGAAACACGTCCGGACAGCAAAGAACCTCTGGTTGTTCAACAAATTGGTTTGCTCATTG
CCTTACTGCCCGAGATTGGACGCTTGCAACGGCAAATTTCACCGCCGACTTCTACATTAATTACCCAGCCGTAA

Upstream 100 bases:

>100_bases
TTGGCCTGTCGGTCGCCGCGTCGTCTCTGTAGAAACCGCTCGCGCCGCGCGAGAAGCTAACGCGCGCCGCCGTTTTGAAT
GATCGGGACAAATAGCCTTT

Downstream 100 bases:

>100_bases
GCGAATGAGCCCAGTCGGCAAGCTCCTGGCGACGACTCGCCGGGAGCGCCGCTTCATGTACGCCGACAATTGCGCCTTCC
AGGGCATACAAAACTTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS
VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGASLYDHWYQQPLLLLAGAVWYNLLTLTGHLL
FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY
YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA
SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV
LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ
YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD
DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP

Sequences:

>Translated_717_residues
MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS
VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGASLYDHWYQQPLLLLAGAVWYNLLTLTGHLL
FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY
YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA
SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV
LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ
YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD
DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP
>Mature_717_residues
MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS
VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGASLYDHWYQQPLLLLAGAVWYNLLTLTGHLL
FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY
YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA
SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV
LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ
YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD
DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=707, Percent_Identity=88.967468175389, Blast_Score=1285, Evalue=0.0,
Organism=Escherichia coli, GI87082248, Length=591, Percent_Identity=24.8730964467005, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81403; Mature: 81403

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRL
CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHH
AGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGAL
HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
LIAIYTMLGASLYDHWYQQPLLLLAGAVWYNLLTLTGHLLFPIRPLQDNLARSYEQLAHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY
HHHHHHHCCCCCCCCCCCCHHHHEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHH
YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPRFERVFTHIDAALERMRASGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNE
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
SENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLVLCIGYALIQITGMRHGYWIL
CCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH
RVLQRATDANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTA
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH
ETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHH
HQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRL
CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHH
AGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGAL
HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
LIAIYTMLGASLYDHWYQQPLLLLAGAVWYNLLTLTGHLLFPIRPLQDNLARSYEQLAHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY
HHHHHHHCCCCCCCCCCCCHHHHEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHH
YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPRFERVFTHIDAALERMRASGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNE
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
SENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLVLCIGYALIQITGMRHGYWIL
CCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH
RVLQRATDANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTA
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH
ETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHH
HQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]