Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 29142131

GI number: 29142131

Start: 1762170

End: 1762949

Strand: Direct

Name: potC [H]

Synonym: t1697

Alternate gene names: 29142131

Gene position: 1762170-1762949 (Clockwise)

Preceding gene: 29142130

Following gene: 29142132

Centisome position: 36.77

GC content: 51.28

Gene sequence:

>780_bases
ATGATCGGTCGGCTGCTCCGTGGCGGTTTCATGACTGCCATCTATGCGTATCTGTATATTCCCATCATTATTCTGATCGT
GAACTCCTTCAACAGTTCGCGGTTCGGCATTAACTGGCAGGGCTTTACCACTAAATGGTACGAACTACTGGTCAATAACG
ACAGTCTGTTACAGGCCGCTCAACATTCACTGACGATGGCGATTTTCTCAGCGACCTTCGCCACGTTGATTGGCTCGTTA
ACCGCGGTAGCGCTTTATCGCTACCGCTTTCGCGGGAAGCCATTCGTCAGCGGGATGCTGTTTGTAGTAATGATGTCGCC
GGATATCGTGATGGCGATCTCCCTGCTGGTGCTGTTTATGTTACTCGGCATTCAACTGGGCTTTTGGTCGTTGCTGTTCT
CGCACATCACCTTTAGCCTGCCGTTTGTGGTCGTCACGGTCTATTCGCGCCTGAAAGGCTTTGATGTCAGAATGCTGGAA
GCCGCAAAAGACCTGGGGGCCAGTGAGGTAACGATTTTACGCAAAATCATTCTGCCGCTGGCGATGCCGGCGGTGGCGGC
GGGCTGGTTGCTGAGCTTTACGTTGTCGATGGACGATGTAGTAGTCTCGTCGTTTGTCACCGGGCCGGGCTATGAAATTT
TACCCTTAAAGATTTATTCCATGGTAAAAGTCGGCGTTTCACCAGAAGTGAACGCGCTGGCGACCGTTTTATTGGTGCTG
TCTCTGGTAATGGTCATTGCCAGCCAGCTTATTGCTCGTGATAAAACCAAGGGCCGATAA

Upstream 100 bases:

>100_bases
ACCGCGAGACGTTTTGGAGAGATTTTGGAGAAGAGAAAAAATTGATCATTTTCAATACTCTAAAAGCACCCCATCCTCTG
AATAAGAAGGTGGAACTTGA

Downstream 100 bases:

>100_bases
GGCCCGTAATTCAGGGGACGTTAAATGAAAAAATGGTCACGCCACCTGCTCGCGGCAGGCGCCCTGGCGCTGGGTATGAG
TGCCGCTCATGCCTCCGACA

Product: spermidine/putrescine ABC transporter membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSL
TAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE
AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATVLLVL
SLVMVIASQLIARDKTKGR

Sequences:

>Translated_259_residues
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSL
TAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE
AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATVLLVL
SLVMVIASQLIARDKTKGR
>Mature_259_residues
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSL
TAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE
AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATVLLVL
SLVMVIASQLIARDKTKGR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=259, Percent_Identity=96.5250965250965, Blast_Score=476, Evalue=1e-136,
Organism=Escherichia coli, GI1787081, Length=251, Percent_Identity=40.6374501992032, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787714, Length=246, Percent_Identity=28.4552845528455, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788764, Length=207, Percent_Identity=28.9855072463768, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787713, Length=116, Percent_Identity=32.7586206896552, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28583; Mature: 28583

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]