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The map label for this gene is ydhJ [H]

Identifier: 29141769

GI number: 29141769

Start: 1372991

End: 1373860

Strand: Reverse

Name: ydhJ [H]

Synonym: t1310

Alternate gene names: 29141769

Gene position: 1373860-1372991 (Counterclockwise)

Preceding gene: 29141770

Following gene: 29141768

Centisome position: 28.67

GC content: 49.89

Gene sequence:

>870_bases
GTGGTAAATATGTCGTTAAAAACAATAAAATATTTTTCTACTCTCATTGTCGCCGTCGTCGCCGTTCTGGCCGCGTGGTG
GTTATGGAATTACTATATGCAGTCACCGTGGACGCGCGATGGTAAAATCCGCGCGGAACAGGTCAGCGTAACGCCACAGG
TTTCTGGCAGCATTACCCAACTCAATATCAAAGATAATCAGTTCGTCAACGCTGGGGACGTTCTCTTTGTCATTGATAAA
ACGCCCTTCCATATTGCAGAACTTAACGCGCAGGCACAGTTGGCCAAAGCGCAGTCCGATCTGGCAAAAGCGAATAATGA
AGCCGATCGACGTCGACATTTATCGCGTAACTACATCTCTGCTGAAGATCTGGATAGCGCCAATCTGAATGTTAAAGCGA
TGCAGGCCAGCGTAGATGTCGCACTGGCAACGTTAAAACAGGCGCAGTGGCAGCTTAGCCAGACGGAAGTAAAAGCGCCG
GTATCCGGCTGGGTGACCAACCTTTCCACGCGTACCGGTGATTATGCTAGCACCGGTAAGCCACTTTTCGCCCTGGTAGA
TAGCCATTCATTTTATGTAATGGGATATTTCGAAGAAACCAAACTACGCCATATCCGCGAAGGTGAGCCTGCATTAATAA
CACTGTATAGTGGCAATGTTAAGTTACAGGGTCACGTTGGCAGTATCGGGCGCGCTATTTACGACCAAAGCGTGGAAAGT
GACTCCGGTTTAGTGCCCGATATCAAACCCAACGTACCGTGGGTACGTCTGGCGCAACGCGTACCGGTACGTATCGAATT
TGACGCTTTGCCGCAGGATATCACGCTCGTCTCCGGCACTACCTGCAGCGTAGCCATTGGACAGCGGTAA

Upstream 100 bases:

>100_bases
TGCGTGACCGGATATACTCTGATGAAATCTGGCATCCCCTGTTAATGGATCTCTCCCTCTTTACGCTTTGCGTATGTCTG
GGCCTCGTTTTACTGATCGT

Downstream 100 bases:

>100_bases
TGAAACTCTCCCTGCCGGCCCTGCGAAATACGCCCTGGTTTAAAGCGACCTCCGGCCAGTGGCGTTACGCGTTGCGCAAT
ACCATTGCCATGTGTCTCGC

Product: HlyD-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDK
TPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAP
VSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRAIYDQSVES
DSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR

Sequences:

>Translated_289_residues
MVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDK
TPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAP
VSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRAIYDQSVES
DSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
>Mature_289_residues
MVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDK
TPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAP
VSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRAIYDQSVES
DSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=84.5614035087719, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1789637, Length=286, Percent_Identity=39.8601398601399, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790519, Length=292, Percent_Identity=31.5068493150685, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1789041, Length=303, Percent_Identity=28.3828382838284, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=27.6527331189711, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790024, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082036, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790012, Length=270, Percent_Identity=24.8148148148148, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789929, Length=120, Percent_Identity=37.5, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31981; Mature: 31981

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEE
LNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYIS
EEECCCCEECCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
AEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAPVSGWVTNLSTRTGDYASTGK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCC
PLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRAIYDQSVES
CEEEEEECCCEEEEEEECHHHHHHHCCCCCEEEEEEECCEEEEECCCHHHHHHHHCCCCC
DSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
CCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEEEECCEEEEEECCC
>Mature Secondary Structure
MVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEE
LNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYIS
EEECCCCEECCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
AEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAPVSGWVTNLSTRTGDYASTGK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCC
PLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRAIYDQSVES
CEEEEEECCCEEEEEEECHHHHHHHCCCCCEEEEEEECCEEEEECCCHHHHHHHHCCCCC
DSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
CCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]