| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is ydhK
Identifier: 29141768
GI number: 29141768
Start: 1370952
End: 1372991
Strand: Reverse
Name: ydhK
Synonym: t1309
Alternate gene names: 29141768
Gene position: 1372991-1370952 (Counterclockwise)
Preceding gene: 29141769
Following gene: 29141764
Centisome position: 28.65
GC content: 55.93
Gene sequence:
>2040_bases ATGAAACTCTCCCTGCCGGCCCTGCGAAATACGCCCTGGTTTAAAGCGACCTCCGGCCAGTGGCGTTACGCGTTGCGCAA TACCATTGCCATGTGTCTCGCGCTGACATTCGCTTATTATCTCAATCTGGATGAGCCCTACTGGGCGATGACTTCGGCCG CAGTGGTGAGCTTTCCGACCGTAGGCGGCGTAATCAGTAAAAGTCTGGGGCGTATTGCCGGGAGTTTACTCGGCGCGACC GCCGCGTTGATTATTGCCGGCCATACGCTGAATGAACCCTGGTTGTTCTTATTTAGCATGGCCGCCTGGATCGGTTTTTG TACCTGGGCCTGCGCGCATTTTACCAATAATGCCGCTTATGCTTTCCAGTTGTCCGGCTACACGGCGGCGATCATCGCGT TCCCGATGGTTAATATTGTAGAAATCACGCAGTTGTGGGATATCGCCCAGGCACGTGTATGTGAAGTTATCGTCGGCATC CTCTGTGGCGGCATGATGATGATGATCCTACCCAGCACATCGGATGGCACTGCCCTGCTCACCGCGTTGAAAAACATGCA TGCGCGCTTGCTGGAACATGCCAGTCTACTGTGGCAGCCGGAGACTACCGACGCTATCCGCTCCGCGCATGAGGGGGTCA TTGGGCAAATCCTGACCATGAACCTGCTGCGTATTCAGGCCTTCTGGAGTCACTACCGTTTTCGCCGTCAGAATGCATTG CTAAATGCATTGTTACACCAGCAATTACGGCTAACCAGCGTGATCTCCAGTCTGCGTAGAATGCTTTTAAACTGGCCGAC GCCGCCGGAAAACAGCCGCGAAGTCATTGAACAACTCTTAGCTGAGTTGGCAAAACCGCGCGCGGACAGCTACACCGTGG CGCGGATTATTGCGCCGCTATGCCCGCAGGATGAACAGGATTATCGTCACCTCGCGTTCTGGCAGCGATTACGCTATTTT TGCCAGCTATATCTGCGCAGCAGCCGTCAATTATATCTGATCGAAAGCGGCGCGCCGGTGGATCAAATCCATATCCGCCG CACTCCCGGCCTTGCGCGGCATACGGATAACGCAGAGGCCATCTGGAGCGGCGTGCGTACCTTTTGCACGCTCACGGTGA TTGGCGCCTGGAGTATTGGCGTGCAATGGGAATCCGGGCCCGGCGCATTAACCCTGGCGGCGATCAGTTGCGTCCTCTAC TCCATCGTCGCCACGCCGTTTAAGTCGCTTTCCTTATTGATGCGTACTTTAGTGCTGCTGTCCTTATTCAGCTTCGTGGT GAAATTTGGCCTGATGGTGCAAATCACCGATCTGTGGCAATTCTTGCTTTTCCTTTTTCCGCTGTTCGTCACGATGCAAC TGCTTAAACTGCAGATGCCTAAGCTGGCGGGACTGTGGGGGCAGCTTATCGTTTTTATGGGCTCATTCATCGCCGTGACC AATCCACCGGTGTACGACTTCGCCGACTTCCTTAACGATAATACCGCCAAGATCGTCGGCGTCGCGATTTCCTGGCTGGC GTTTGCGATTTTGCGCCCCGGTTCCGATGCCGTAAAAAGCCGCCGCCATATCCGCGCGCTACGCCGGGATTTCGTCGATC AGCTTAGCCGTCACCCTTCCCATAGCGAAAGCGAGTTTGAATCGCTGACCTATCATCACGTCAGTCAGCTCAGCAATAGT CAGGATGCGCTGGCGCGCCGGTGGTTATTACGTTGGGGAGTGGTGCTGCTGAACTGCTCGCATGTGGTGTGGCAGCTGCG CGCCTGGGAGTCGCGTTCCGATCCGCTTTCCCGGGTGCGGGATATTTGTATATCCCTGCTGCGCGATGTGATGAGCGAGC GCGACGTGCAGCAACGCCCGCTTGCCGTCACGCTACAGGAACTACAGCGTATCTGCGACACGCTCGCACATCATCATCAA CCCGCCGCGCATGAGCTGGCGGCGATTATCTGGCGTTTACACTGTTCGCTGTCGCAGCTGGAACAGGCTCCAGCGCAGGG AACACTGTCTCCGGGTTATTTAATGACGCCGCAGGCGTAA
Upstream 100 bases:
>100_bases TGGCGCAACGCGTACCGGTACGTATCGAATTTGACGCTTTGCCGCAGGATATCACGCTCGTCTCCGGCACTACCTGCAGC GTAGCCATTGGACAGCGGTA
Downstream 100 bases:
>100_bases CGCGTTCCGCCGCCGCCGAGCGGTTTCGGCTGATCGGACATGTTATCGCCGCCCACATGGATCATGAGCGCTTTATCTTT CACTTCATCAAGAGACTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 679; Mature: 679
Protein sequence:
>679_residues MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI LCGGMMMMILPSTSDGTALLTALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVARIIAPLCPQDEQDYRHLAFWQRLRYF CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGVQWESGPGALTLAAISCVLY SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHSESEFESLTYHHVSQLSNS QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQ PAAHELAAIIWRLHCSLSQLEQAPAQGTLSPGYLMTPQA
Sequences:
>Translated_679_residues MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI LCGGMMMMILPSTSDGTALLTALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVARIIAPLCPQDEQDYRHLAFWQRLRYF CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGVQWESGPGALTLAAISCVLY SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHSESEFESLTYHHVSQLSNS QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQ PAAHELAAIIWRLHCSLSQLEQAPAQGTLSPGYLMTPQA >Mature_679_residues MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI LCGGMMMMILPSTSDGTALLTALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVARIIAPLCPQDEQDYRHLAFWQRLRYF CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGVQWESGPGALTLAAISCVLY SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHSESEFESLTYHHVSQLSNS QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQ PAAHELAAIIWRLHCSLSQLEQAPAQGTLSPGYLMTPQA
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family
Homologues:
Organism=Escherichia coli, GI1787933, Length=670, Percent_Identity=84.7761194029851, Blast_Score=1125, Evalue=0.0, Organism=Escherichia coli, GI1789636, Length=287, Percent_Identity=24.390243902439, Blast_Score=80, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YDHK_SALTI (Q8Z6P7)
Other databases:
- EMBL: AL627271 - EMBL: AE014613 - RefSeq: NP_456089.1 - RefSeq: NP_805110.1 - ProteinModelPortal: Q8Z6P7 - GeneID: 1070734 - GeneID: 1248055 - GenomeReviews: AE014613_GR - GenomeReviews: AL513382_GR - KEGG: stt:t1309 - KEGG: sty:STY1681 - HOGENOM: HBG298004 - OMA: FCHLYLR - ProtClustDB: CLSK880154 - BioCyc: SENT209261:T1309-MONOMER - BioCyc: SENT220341:STY1681-MONOMER - GO: GO:0006810 - InterPro: IPR006726
Pfam domain/function: PF04632 FUSC
EC number: NA
Molecular weight: Translated: 76491; Mature: 76491
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xc2c38e8)-; HASH(0xe1d7248)-; HASH(0xdb99a9c)-; HASH(0xaf98884)-; HASH(0xe5190f0)-; HASH(0xe1d7308)-; HASH(0xe0952a8)-; HASH(0xdfbcab8)-; HASH(0xe249d04)-; HASH(0xe5cb798)-; HASH(0xda37034)-; HASH(0xdf520f4)-;
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPT CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH VGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE AFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGILCGGMMMMILPSTSDGTALL EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH TALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVARIIAPL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC CPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEA CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCHHH IWSGVRTFCTLTVIGAWSIGVQWESGPGALTLAAISCVLYSIVATPFKSLSLLMRTLVLL HHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHCC NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPS CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC HSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH DICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQL HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EQAPAQGTLSPGYLMTPQA HCCCCCCCCCCCEEECCCH >Mature Secondary Structure MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPT CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH VGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAY HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE AFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGILCGGMMMMILPSTSDGTALL EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH TALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVARIIAPL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC CPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEA CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCHHH IWSGVRTFCTLTVIGAWSIGVQWESGPGALTLAAISCVLYSIVATPFKSLSLLMRTLVLL HHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHCC NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPS CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC HSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVR CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH DICISLLRDVMSERDVQQRPLAVTLQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQL HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EQAPAQGTLSPGYLMTPQA HCCCCCCCCCCCEEECCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504