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The map label for this gene is ssaS [H]

Identifier: 29141749

GI number: 29141749

Start: 1353794

End: 1354060

Strand: Direct

Name: ssaS [H]

Synonym: t1288

Alternate gene names: 29141749

Gene position: 1353794-1354060 (Clockwise)

Preceding gene: 29141748

Following gene: 29141750

Centisome position: 28.25

GC content: 41.57

Gene sequence:

>267_bases
ATGAATGATTCTGAATTGACGCAATTTATAACGCAACTTTTATGGATCGTCCTTTTTACGTCTATGCCGGTGGTGTTGGT
GGCATCGGTAGTTGGTGTCATCGTAAGTCTTGTCCAGGCCTTGACTCAAATTCAGGACCAAACGCTACAGTTCATGATTA
AATTATTAGCAATTGCAATAACTTTGATGGTCAGCTACCCATGGCTTAGCGGAATCCTGTTGAATTATACCCGGCAGATA
ATGTTACGAATTGGAGAGCATGGTTGA

Upstream 100 bases:

>100_bases
TGGTATCGCCAATGACCATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCG
CAATTGGTACAGAGCTTTTC

Downstream 100 bases:

>100_bases
ATGACACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTGAGCCTTTCTTTATTACTTCC
TCTATTAAAAAGTGGCAGTT

Product: type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG

Sequences:

>Translated_88_residues
MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG
>Mature_88_residues
MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG

Specific function: Part of a type III secretion system [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 9891; Mature: 9891

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMVSYPWLSGILLNYTRQIMLRIGEHG
HHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMVSYPWLSGILLNYTRQIMLRIGEHG
HHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9023191; 11677609 [H]